Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1878 CATAACAATATTTCTGATTTTTCCACTACTCAACACCCAAATCCAAGTGCAAGAATGCTTTCAAATCACAATCCTTCAAGCACATCATCAGAAGAAATAGCAAAACCTACAAGGAAATTTCCTTTACCTGCACGAAACACCATTCAAGGTCTTAGAAGTGGCACTAGCTCTAGCTGTGAAAGTTTAGAGAGCATTTGTAATGCACATATCAAGCCACATACTAGAGGTGATGTGAGGTGGGATGCAATTAACATGGTTGCTAAGGGTAATGATCTTAATCTCAGTCATTTCAGGCTTCTGAAGCGTGTTGGATATGGTGATATTGGAAGTGTGTACCTTGTGGAACTTAAAGAAAGCAAAGCATTCTTTGCCATGAAAGTTATGGACAAGGAATCACTTGCTAGTAGAAACAAGCTTTTGAGGGCACAAACAGAAAGAGAGATTCTTGGACTTCTCGACCACCCTTTTTTACCAACTTTATATTCTTATTTTGAGACTACTAAGTACTATTGTTTGGTCATGGAGTTTTGTAGTAGTGGCAGTTTGCATTCTCTTCGGCTGAAGCAACCCAACAAGCATTTCACTGAAGAAGCTACTCGGTTTTATTGTTCAGAAATTTTGCTAGCTTTGGAATACTTGCACATGTTAGGCATTGTGTATAGAGACTTAAAACCAGAAAATGTTCTAGTTCGAGATGAAGGTCACATAATGTTATCAGATTTTGACTTATCTCTTCGATGCTCTGTGAATCCTACACTAGTGAAGTCATCATCTGCACATGAAAGTAGTAATGGTCCTTCTGGAGGCATTCTGAATGATGAGCAAGCAATACATGGTTGCAAACAACCCTCAAGTTTCTTTCCACGCATTTTGCCTTCAAAAAAGAATCACAAGTCAAAGTCAGATTTTGGCCTCATGGTTGGAGGATGCCTCCCTGAACTAATGGCAGAGCCTACAAATGTGAGGTCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCTGAGATTATTCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACCTTTGGAATCTTCTTATATGAGCTTTTGCATGGTATAACACCCTTTAAGGGTGCTGGAAATAAAGCTACCCTCTTCAATGTTGTAGGACAACCCTTAAGGTTTCCTGAAAAACCCTCTGTTAGCAAAGTTGCAAAAGACCTTATACAAGGGTTGTTGGTGAAAGAGCCTCAAAAAAGATATGCTTACAAGAGGGGTGCCACAGAAATAAAGCAACACCCTTTTTTCCATGGAGTGAATTGGGCTCTTGTTAGAAGTGCTACACCTCCTATTATACCAGAACCTTTGGATTTTTCTAAGTATAGTAGAAAAGCAAAATATTCACCAATGGATAAGAAGATTGCAGATATTGTTGCAAGTGATAAAAGCAAGCATACACAACCAGATTCATCTTATGAAGATTTTGAGTACTTTTAG 1467 0.392 HNNISDFSTTQHPNPSARMLSNHNPSSTSSEEIAKPTRKFPLPARNTIQGLRSGTSSSCESLESICNAHIKPHTRGDVRWDAINMVAKGNDLNLSHFRLLKRVGYGDIGSVYLVELKESKAFFAMKVMDKESLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETTKYYCLVMEFCSSGSLHSLRLKQPNKHFTEEATRFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHESSNGPSGGILNDEQAIHGCKQPSSFFPRILPSKKNHKSKSDFGLMVGGCLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGAGNKATLFNVVGQPLRFPEKPSVSKVAKDLIQGLLVKEPQKRYAYKRGATEIKQHPFFHGVNWALVRSATPPIIPEPLDFSKYSRKAKYSPMDKKIADIVASDKSKHTQPDSSYEDFEYF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1878 488 Gene3D Transferase(Phosphotransferase) domain 1 181 250 - -
Pvu11g1878 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Pvu11g1878 488 SUPERFAMILY Protein kinase-like (PK-like) 94 453 IPR011009 -
Pvu11g1878 488 SMART serkin_6 97 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1878 488 Gene3D Transferase(Phosphotransferase) domain 1 293 444 - -
Pvu11g1878 488 Pfam Protein kinase domain 320 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1878 488 Pfam Protein kinase domain 98 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1878 488 MobiDBLite consensus disorder prediction 469 488 - -
Pvu11g1878 488 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 27 488 - -
Pvu11g1878 488 ProSiteProfiles Protein kinase domain profile. 97 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1878 488 PANTHER FLIPPASE KINASE 1-RELATED 27 488 - -
Pvu11g1878 488 Gene3D Phosphorylase Kinase; domain 1 95 180 - -
Pvu11g1878 488 CDD STKc_phototropin_like 95 447 - -
Pvu11g1878 488 MobiDBLite consensus disorder prediction 1 44 - -
Pvu11g1878 488 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1878 Pvu-Chr11 45655282 45658176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1878 62 458 AGC Kinase Gene Family AT1G79250 74.938 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pvu11g1878 Pkinase 6.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1878 - - gmx:100802478 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1878 11 45655282 45658176 Pvu11g1878 11 45655282 45658176 ECH
Pvu5g0455 5 4427848 4430607 Pvu11g1878 11 45655282 45658176 PCT