Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1867 ATGGGAAATTCGCACACCAAAAGACGTGATGTCGTCTCTCCGGCGTTATCTAGAAAATTGTCACCGCCACCACGACCGTCGTCGTCGGAATCATCACGGAAACCACCGCGAGAGCCACCACCGGCGCAACACCACGGCTCTGGAAAATTATCTGCGAAAGAGAAATACGCTCTGATTCCTGATAACTTCACTTCGCTTGAACAGGTTACAAATGCCTTGAGGAACGAAGGTTTAGAATCATCAAATCTTCTCCTTGGAATTGATTTTACCAAAAGCAATGAATGGACTGGAAGTGTCTCATTCAACAATAAAAGTCTACATGCTATTGGAAATACACCTAACCCCTATGAGAAAGCCATCAGGATTATTGGCAAAACTCTGGCTCCCTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCCACCACTCATGATCGAGAAGTGTTTAGCTTTCACAGTGATCATTCATCTTGCCATGGATTTGAGGAGGTTTTGACTTGCTATCAGAAAATTGTTCCAAACTTAAGACTTTCAGGACCAACTTCTTACGCTCCAGTGATTGAGGCTGCAATAGACATAGTTGAGCAAAGTCATGGTCAATTCCATGTGTTAGTTATTATTGCAGATGGCCAGGTTACAACAAGTGCTGCCTCTGAAGACGGAGAACTAAGTCCACAAGAAGCAAGGACTATCAAAGCAATAGCTGATGCAAGTTCATATCCCATGTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGATGACATGAAGAAGTTTGATGACAAGATACCGGCTCGCGAATTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGTCTAAGAAATCAAGCTCCTCTGAAAAAGAAGCTGCTTTTGCTCTGGCTGCACTAATGGAAATACCTTTCCAATATAAAGCAGCCATTGAACTGGAACTACTTGGCCGAGTAACAGGAAGGGCAAATAAAATTGTTCCAAGACCTCCTCCAGCCCCTTATTCTAGGCTTGTGCCACCAGCTCGTGTTCTCAGCAATATGCCAACTTTCATGGATGATGAGAGAAATCAAATGGCATGTGCTATTTGTCTGACAAGTAGAAAGGATTTGGCCTTTGGATGTGGTCACATGACCTGTAGAGACTGTGGATCCAAGTTAAGTAACTGTCCAATATGCCGTCAGAGGATCACCAATCGTCTGAGGGTGTTTTCTAGCTGA 1227 0.4328 MGNSHTKRRDVVSPALSRKLSPPPRPSSSESSRKPPREPPPAQHHGSGKLSAKEKYALIPDNFTSLEQVTNALRNEGLESSNLLLGIDFTKSNEWTGSVSFNNKSLHAIGNTPNPYEKAIRIIGKTLAPFDDDNLIPCFGFGDATTHDREVFSFHSDHSSCHGFEEVLTCYQKIVPNLRLSGPTSYAPVIEAAIDIVEQSHGQFHVLVIIADGQVTTSAASEDGELSPQEARTIKAIADASSYPMSIILVGVGDGPWDDMKKFDDKIPAREFDNFQFVNFTDIMSKKSSSSEKEAAFALAALMEIPFQYKAAIELELLGRVTGRANKIVPRPPPAPYSRLVPPARVLSNMPTFMDDERNQMACAICLTSRKDLAFGCGHMTCRDCGSKLSNCPICRQRITNRLRVFSS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1867 408 Pfam Copine 105 318 IPR010734 -
Pvu11g1867 408 SUPERFAMILY RING/U-box 357 402 - -
Pvu11g1867 408 ProSiteProfiles Zinc finger RING-type profile. 363 396 IPR001841 -
Pvu11g1867 408 PANTHER COPINE FAMILY PROTEIN 1 44 406 - -
Pvu11g1867 408 Pfam Zinc finger, C3HC4 type (RING finger) 360 400 - -
Pvu11g1867 408 SMART VWA_4 80 283 IPR002035 -
Pvu11g1867 408 CDD RING-HC_RGLG_plant 363 406 IPR045317 GO:0061630|GO:0070534
Pvu11g1867 408 SMART ring_2 363 395 IPR001841 -
Pvu11g1867 408 SUPERFAMILY vWA-like 82 263 IPR036465 -
Pvu11g1867 408 MobiDBLite consensus disorder prediction 1 50 - -
Pvu11g1867 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 408 IPR013083 -
Pvu11g1867 408 Gene3D von Willebrand factor, type A domain 81 296 IPR036465 -
Pvu11g1867 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 44 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1867 Pvu-Chr11 45507032 45518040 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1867 K16280 - gmx:100795579 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1867 11 45507032 45518040 Pvu11g1867 11 45507032 45518040 ECH
Pvu5g0482 5 5085415 5096362 Pvu11g1867 11 45507032 45518040 PCT