Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1794 ATGGGTCGTCGGAAAATTCAGATTGCGAGAGTGAAGGACCCCAACACGAGACAAATCACGTTTTCAAAGCGTCGAACAGGTTTGTTCAAGAAAGCGAACGAGTTGTCCATCATGTGTGGTGCAAAGATTGCCATTGTGGTGTTCTCTCCGGGGAACAAACCTTACTCGTTTTCCCACCCTGGAGTTCATCTTGTTGCTGCAGAATTTCTTCAGCAAGATCTTAGACCAAACCAACTCCAAAGAGGACCCTCTTTTGATGTTTATAAGAATCACTACTTTAATCTGCAGAATCTTGATCTCATGAGACAGTTGGCTGAGGAAGAAAGTAAAAGTGCAATGCTTGATGAAGCTATCGGTCATGGCAAAGGAACTCGACTCTCTGAACTTCAAAAACTACACACTTCTCTTGCTGATATCAATTCAAAGGTGAAGAGTGAGATCGAGGCTGCAGAAACTATGATACTCTTTTCACAGGAGGGAGTAGAATTTCCTTCTGCAACAAGAGAGGAAAATTAG 516 0.4283 MGRRKIQIARVKDPNTRQITFSKRRTGLFKKANELSIMCGAKIAIVVFSPGNKPYSFSHPGVHLVAAEFLQQDLRPNQLQRGPSFDVYKNHYFNLQNLDLMRQLAEEESKSAMLDEAIGHGKGTRLSELQKLHTSLADINSKVKSEIEAAETMILFSQEGVEFPSATREEN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1794 171 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Pvu11g1794 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu11g1794 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu11g1794 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu11g1794 171 CDD MADS 2 60 - -
Pvu11g1794 171 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Pvu11g1794 171 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu11g1794 171 PANTHER MADS BOX PROTEIN 2 162 - -
Pvu11g1794 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 162 - -
Pvu11g1794 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu11g1794 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1794 Pvu-Chr11 44518424 44518939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1794 1 69 Type I MADS-box Gene Family AT3G66656 62.319 2.48e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu11g1794 SRF-TF 7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1794 - - vun:114170134 299.286