Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1663 ATGGATAGTGGCTACTACAATCAGCGCCACCACCCTCACCTCGACAACAACAATGAACAACATTTACCTCCTGGCTTCCGGTTCCACCCCACCGATGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGCTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAGCCATGGGAGCTTCCTGAGAAAGCAAAGATGGGGGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGTAAGTACCCAACAGGCTTACGCACCAACAGGGCCACAGAAGCTGGTTATTGGAAAGCCACTGGAAAAGACCGAGAGATCTATAGCTCCAAAACCTGTTCCCTCGTTGGAATGAAGAAAACCCTTGTTTTCTATAGAGGAAGAGCTCCAAAGGGTGAAAAGAGTAACTGGGTCATGCATGAGTATCGTTTAGAAGGCAAATTCGCTTACCACTACCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATATCGCGTGTGTTTCAGAAGAACAACACCGGCGGTGCCTCCACTGTGTCAGCCGCCGTAGCCACCGGCGGTTCCAAGAAAACGAGAATAAGCACATCAAACACAAGCAGCAACATGAGTCTCTGCCCCGAACCGGGTTCACCCTCTTCCATTTACCTCCCACCGCTTCTAGAATCTTCTCCATACGCCGCCAGCAGCAGCGCCGTCGCAACATTCAACGACCGCGAAAACTACTCCTTCGAAAGCGCCGCCGCCGCAGCCGCCGCCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACTTTATCCACCGACGCTTCCGCCTTCAACCAGCTCGCTCCGCAGCCGGAGCCGCCACTCGACCCTTTCTCCCGCTTTCACAGGAACAACGTTGGACTGTCCGCCTTCCCATGTCTGAGGTCCTTGCACGACAACCTTAACCTCCCCTTCTTTTTCCCTCCCATGGTCCATGGCGGCACTGATGTAGCAAATTTTAGCGCCGTCGCAAACTTTCCGGCGCCGGAGGATCCGAGGGTGGTTGACGGCAGCTCTGGCATGTCGATTGTACCGTCCGAATTGGATTGCATGTGGGGCTATTGA 1098 0.5355 MDSGYYNQRHHPHLDNNNEQHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNNTGGASTVSAAVATGGSKKTRISTSNTSSNMSLCPEPGSPSSIYLPPLLESSPYAASSSAVATFNDRENYSFESAAAAAAANQREHVSCFSTLSTDASAFNQLAPQPEPPLDPFSRFHRNNVGLSAFPCLRSLHDNLNLPFFFPPMVHGGTDVANFSAVANFPAPEDPRVVDGSSGMSIVPSELDCMWGY* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1663 365 Gene3D NAC domain 31 178 IPR036093 GO:0003677|GO:0006355
Pvu11g1663 365 ProSiteProfiles NAC domain profile. 22 174 IPR003441 GO:0003677|GO:0006355
Pvu11g1663 365 MobiDBLite consensus disorder prediction 1 26 - -
Pvu11g1663 365 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Pvu11g1663 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 12 331 - -
Pvu11g1663 365 MobiDBLite consensus disorder prediction 1 17 - -
Pvu11g1663 365 SUPERFAMILY NAC domain 18 174 IPR036093 GO:0003677|GO:0006355
Pvu11g1663 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1663 Pvu-Chr11 42197436 42199889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1663 1 365 NAC Transcription Factor Family AT5G53950 51.010 4.47e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu11g1663 NAM 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1663 - - gmx:100788671 587.8