Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1659 ATGTCACATTCTGGGAAACCCGTATCCGAGTTAGGGCTCAGCGAGCGCTTGCGCGACTCACTGAGTTGCTCTGACGATTCCAACAAGCCCGATTTCCGAGAACTCGATTTGGGTTCGCCGGTTTCCACATTGCGGCCACGCCAGCACTTCCAGAACCACAGTGCGCCCACCACGAGTAGTAACAGTAGCAGTAGTAGCGGCGGCTCTACAGGGTCGGTTCCGGGTCGGAGCAACCCGGTTTCGGGAAGATCCCATTCCGGCGAGTTGTCCGGGTCGAGTGAGACTAATAGTCCGACCCGGGTATCCAAACCGGGTCACCGGAGATCTAGTTCTAGTCAGAGTTTGAGTCAGAGTCAGAGCCAGAGATCCCCGTCGTCGTCATCTGCTGCTGTGAATTCGCCGCCGCTGAATGTTCTCCCGGCTGGGAACATTTGCCCGTCCGGGAGGGTTCTCAAGGCGGCGACGGTGCCGGCAGTGGCGAGCCGGAGCTCCAGGAGTGATGTGTTGGGGTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGTGGCGGAAAGGGTGGCGGTGATGCGGCGAATGTTAAGATCGGCGGCGGTGATTCGGGGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTACAAGAGAGGGCACTTTGGTGAGGCCTTGTGTTTGTATGATCGGGCAATTGCGATGTCTCCGGGCAATGCCGCTTATCGGAGCAACCGGGCGGCAGCATTGACCGGATTAGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAACGCTGTTTTTAAGGTTAGGACAGGTCGAGGATGCTAGGAAGCACCTTTGTTATCCTGGGCTGCACCCGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGAGATGTTCGGAGGATAAGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTGTAGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTCAAGCTACACCAGATGGATGATGCTGAATTGTGTTTATCATGGATTCCCAAAAGTGAGCCTCATCCGAGTTCCTTGGCACAGGCAAGATTTTTCGGGATGTTTTCTGAGGCTTACTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATCGACCCACGAAATGTTGAAGTTGCTGTTCTGCTCAAGAATGTGAGGATGGTGGCTAGAGCTAGACTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCGTGCTCGGCATATGGAGAAGGTTTGAGGCTTGATCCTTCAAACTCTGTTCTCTACTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGATTGCAATCAAGCTTTACGCATCCAACCAAATTACACAAAAGCAATTCTTCGGAGAGCTGCCTCAAACAGCAAGTTAGAAAGGTGGGAAGAAGCAGTAAAGGATTATGAACTTTTGCGGAGAGAATTACCAGATGACAATGGTGTTGCCGAAAATCTGTTTCATGCACAAGTAGCATTAAAAAAATCTCGTGGGGAAGAAGTACAAAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCGGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTCGCAATGTAAGCAGATATCTCCTTTCGTGGTTACACTGTGCAGTCGCTATCCATCTATCACCTTTCTTAAGGTGGATATTCAAGCAAGCCCTGCAGTTGCCACTGCGGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACATTCCATTAGGCATTACAGCTTGTAG 2040 0.5034 MSHSGKPVSELGLSERLRDSLSCSDDSNKPDFRELDLGSPVSTLRPRQHFQNHSAPTTSSNSSSSSGGSTGSVPGRSNPVSGRSHSGELSGSSETNSPTRVSKPGHRRSSSSQSLSQSQSQRSPSSSSAAVNSPPLNVLPAGNICPSGRVLKAATVPAVASRSSRSDVLGSGTGNYGHGSIMRGGKGGGDAANVKIGGGDSGKRVDPEEVKRMGNEEYKRGHFGEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLATLFLRLGQVEDARKHLCYPGLHPDPAELQKLQIVEKHINKCGDVRRIRDWNSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQMDDAELCLSWIPKSEPHPSSLAQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLKNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNGVAENLFHAQVALKKSRGEEVQNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNSQCKQISPFVVTLCSRYPSITFLKVDIQASPAVATAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1659 679 Pfam Tetratricopeptide repeat 213 273 - -
Pvu11g1659 679 MobiDBLite consensus disorder prediction 44 134 - -
Pvu11g1659 679 Pfam Thioredoxin 585 671 IPR013766 -
Pvu11g1659 679 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Pvu11g1659 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 11 677 IPR044534 -
Pvu11g1659 679 Pfam Tetratricopeptide repeat 401 432 IPR019734 GO:0005515
Pvu11g1659 679 CDD TRX_family 584 665 - -
Pvu11g1659 679 SMART tpr_5 351 384 IPR019734 GO:0005515
Pvu11g1659 679 SMART tpr_5 241 274 IPR019734 GO:0005515
Pvu11g1659 679 SMART tpr_5 445 478 IPR019734 GO:0005515
Pvu11g1659 679 SMART tpr_5 399 432 IPR019734 GO:0005515
Pvu11g1659 679 SMART tpr_5 479 512 IPR019734 GO:0005515
Pvu11g1659 679 SMART tpr_5 207 240 IPR019734 GO:0005515
Pvu11g1659 679 SMART tpr_5 513 546 IPR019734 GO:0005515
Pvu11g1659 679 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Pvu11g1659 679 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Pvu11g1659 679 MobiDBLite consensus disorder prediction 159 173 - -
Pvu11g1659 679 MobiDBLite consensus disorder prediction 1 137 - -
Pvu11g1659 679 SUPERFAMILY Thioredoxin-like 482 677 IPR036249 -
Pvu11g1659 679 MobiDBLite consensus disorder prediction 19 33 - -
Pvu11g1659 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 11 677 - -
Pvu11g1659 679 SUPERFAMILY TPR-like 207 435 IPR011990 GO:0005515
Pvu11g1659 679 Gene3D Tetratricopeptide repeat domain 205 565 IPR011990 GO:0005515
Pvu11g1659 679 Gene3D Glutaredoxin 571 678 - -
Pvu11g1659 679 MobiDBLite consensus disorder prediction 156 208 - -
Pvu11g1659 679 Pfam Tetratricopeptide repeat 481 512 IPR001440 GO:0005515
Pvu11g1659 679 Coils Coil 519 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1659 Pvu-Chr11 42015306 42019470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1659 444 589 U-box Gene Family AT3G07370 28.415 1.76e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1659 - - gmx:100805790 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1659 11 42015306 42019470 Pvu11g1659 11 42015306 42019470 ECH
Pvu5g0693 5 10346195 10350324 Pvu11g1659 11 42015306 42019470 PCT
Pvu11g1659 11 42015306 42019470 Pvu5g0991 5 28599039 28602473 PCT