Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1656 ATGACTTGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGACACTCGATTGACCGGAGTTGATTTAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAAGGAACTGCGAAATGCCACCGCAGGTTTTAGTCCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGAAGTCTATAAGGGAAAGCTGAGAAATGGTTCTCAGGTAGCTATAAAGGTTTTATCAGCTGAATCAAGACAAGGGGTCCGAGAGTTTTTGACAGAAATCAAGGTGATTTCTAGTATAGAGCACGAGAATCTGGTTAAGTTGCATGGATGTTGTGTGGAAGGCAAGCACAGGATTTTGGTATATGGCTATCTCGAGAATAACAGCCTAGCACAAACACTTATTGGTTCAGGCCACAGTAGCATCCAATTCAGTTGGTCTACAAGAAGGAACATTTGTGTAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAAGAGGTTCGGCCACAAATTATCCACAGAGACATAAAAGCAAGCAATGTACTACTCGACAAAGATCTCCAGCCAAAAATTTCAGATTTTGGGCTTGCAAAGCTTATTCCACCAAACCTGACCCATATCAGTACACGTGTTGCTGGAACAGCTGGTTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTAGAAAATCAGATGTTTATAGCTTTGGAGTTTTATTATTAGAAATTGTTAGCGGAAGGCCTAACACAAATAGACGTTTACCTGATGAAGAACAGTATCTTCTCACAAGGGCTTGGGATTTGTATGAGGGTGGGGAGACAGAAAAATTGGTGGATGCTTTTCTAGATGGAGACTTCAATATTGAGGAGGCAATCAGATTTTGTAAAATTGGTCTCCTTTGCACTCAGGATTCTCCTCACCTCCGGCCCTCTATGTCCACTGTGCTTGAAATGCTTTTAGGTGAAAAAGATTTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGGAAACAAAAGGGCAAGTCTGAAGAGAAAGGTAATTTTTTGTTGGCTGAAGGGAAGCAAGATGAGTCATCTTCTTCAGAAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATATATGATCGAAGCAATTAA 1170 0.4128 MTCCFHLFRKKGSSSDTRLTGVDLDVSEIQNVNIYTYKELRNATAGFSPANKIGQGGFGEVYKGKLRNGSQVAIKVLSAESRQGVREFLTEIKVISSIEHENLVKLHGCCVEGKHRILVYGYLENNSLAQTLIGSGHSSIQFSWSTRRNICVGVARGLAFLHEEVRPQIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPDEEQYLLTRAWDLYEGGETEKLVDAFLDGDFNIEEAIRFCKIGLLCTQDSPHLRPSMSTVLEMLLGEKDLNEENVTKPGMIFEFVEAKSAGKQKGKSEEKGNFLLAEGKQDESSSSETMSSFATMTFTAIYDRSN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1656 389 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Pvu11g1656 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pvu11g1656 389 CDD STKc_IRAK 53 318 - -
Pvu11g1656 389 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1656 389 PANTHER RECEPTOR-LIKE KINASE 1 375 - -
Pvu11g1656 389 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Pvu11g1656 389 Pfam Protein kinase domain 50 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1656 389 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1656 389 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Pvu11g1656 389 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 375 - -
Pvu11g1656 389 MobiDBLite consensus disorder prediction 347 372 - -
Pvu11g1656 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1656 Pvu-Chr11 41952782 41956693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1656 19 321 Receptor kinase-like Gene Family AT1G53430 56.436 7.59e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g1656 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1656 - - gmx:100797257 689.878