Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1589 ATGGATGAAATGAGTGAAGGAAACATTTTATGGCCTAATATGTGCAGAGTGGCAGTGACAGAAAATATAGATTCTCATTACTTACTAGATGCTTATGACAATGGAATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTAATGCAATTGGTATCCCTTTGTTACCGCTCTCTAACCATTTGATTCAAGCTCCAACTCCTTCATTAGAGATTGCAACAAATGATCCCCAAAGCAATCATGATATAGTAAGAAGCAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAACCTACGCAAGAGACGAGAGGAAACTCCATCGACTTTCATCCTGCACTTACACTTCCAACAAATCCTTTAAGCACTTCTTCAGTGCACGTGACAACTACTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGATGATGATAGTGATATGCACTTGGACATTGATGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGGATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAGGTAGCTGTTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATCGGAATTCTCCAATGCGGACATGGATATCACGCAGATTGTATAAAGACATGGTTGCACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTAGATAG 816 0.4032 MDEMSEGNILWPNMCRVAVTENIDSHYLLDAYDNGMVYGRRAFNGVQHQPNAIGIPLLPLSNHLIQAPTPSLEIATNDPQSNHDIVRSRSRSDYRFLHPQYQAQPTQETRGNSIDFHPALTLPTNPLSTSSVHVTTTPHWRNLPPQAFLQDDDVPWLGDDDSDMHLDIDDMSYEELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSGEVAVEEQENDLCIICQDEYKNKQEIGILQCGHGYHADCIKTWLHEKNVCPLCKSEALTLR* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1589 271 SUPERFAMILY RING/U-box 216 268 - -
Pvu11g1589 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 94 269 IPR045191 GO:0061630
Pvu11g1589 271 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Pvu11g1589 271 SMART ring_2 223 263 IPR001841 -
Pvu11g1589 271 PANTHER OS04G0185500 PROTEIN 94 269 - -
Pvu11g1589 271 Pfam Ring finger domain 222 264 IPR001841 -
Pvu11g1589 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 268 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1589 Pvu-Chr11 40295560 40296870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1589 159 268 C3H Transcription Factor Family AT2G15530 50.450 5.43e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1589 K19041 - pvu:PHAVU_011G149000g 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0712 5 11049361 11053289 Pvu11g1589 11 40295560 40296870 PCT