Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1555 ATGGATGGGTTATCTTGTGTGTTGTGTGAGAAGCGGGCTATGATGCTGTGTGACTCGGACCAGGCTAAGCTATGCTGGGACTGCGACGAGAAAGTTCACAGCGCGAATTTCTTAGTCGCAAAACATTCCAGGGTTCTTCTCTGTCGTTTGTGTCACTCCCCTACTCCGTGGACGGCTTCAGGCACGAAACTCACGCCCACCGTGTCGTTTTGTCACCGTTGCATCCTGCGTCGACACACGCGGTTGAACCACTTGGTGAATACCGATCAACGGCACCGTGATAGTGTGAACGACGATGAGGAACATGATTTTGATCACGTTCTTGATTACGATAACAGTGATTACATTGAAGAAGAGGGTGAAGAAGAAGATGATGACGAAGAAGAGGATGAGGATGAGGAAGGAGAAAATCAAGTGGTTCCAATGTCTTCTGGTTCTGCCACGTCACCTCCGCGGTTAAGAAACATCTCTTTAACTTTTGATTCTCAT 489 0.4806 MDGLSCVLCEKRAMMLCDSDQAKLCWDCDEKVHSANFLVAKHSRVLLCRLCHSPTPWTASGTKLTPTVSFCHRCILRRHTRLNHLVNTDQRHRDSVNDDEEHDFDHVLDYDNSDYIEEEGEEEDDDEEEDEDEEGENQVVPMSSGSATSPPRLRNISLTFDSH 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1555 163 Pfam B-box zinc finger 5 46 IPR000315 GO:0008270
Pvu11g1555 163 MobiDBLite consensus disorder prediction 139 163 - -
Pvu11g1555 163 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pvu11g1555 163 CDD Bbox1_BBX-like 6 47 - -
Pvu11g1555 163 MobiDBLite consensus disorder prediction 89 113 - -
Pvu11g1555 163 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 153 - -
Pvu11g1555 163 MobiDBLite consensus disorder prediction 114 137 - -
Pvu11g1555 163 MobiDBLite consensus disorder prediction 89 163 - -
Pvu11g1555 163 PANTHER OS08G0178800 PROTEIN 5 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1555 Pvu-Chr11 39372209 39372854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1555 1 101 C2C2-CO-like Transcription Factor Family AT5G54470 53.465 3.19e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu11g1555 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1555 - - pvu:PHAVU_011G1498000 318.161