Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1549 ATGGAGCAGGAGATGGAGAACATAGAGTCTCAAGCTTCTTACAAAGCAACAGTACAAGAGGAAGCACGTGACATCTTTGGCAAGGGAAATTCTTCAGTAACTCTAAAGTTCCACGATGTTATCTATAAAATTAAGAACAGAAAGTGGGGATTTCTGAAGAACACGGTAGAAGAGAAAGTGGTTCTGAATGGAGTGACAGGCATGGCTCAACCTGGTGAAATTCTTGCCATGTTAGGTCCTTCTGGGAGTGGCAAAACAACTTTGCTAGCAGCATTGGGAGGCAAGCTTGGAGGGAAACTCTATGGAAGCATAACATATAATGGCAAAGCCTTCTCAAATGCAATGAAGAGGAACACAGGTTTTGTGACACAAGATGATGTTCACTATCCCCACTTGACTGTGACTGAAACTCTAGTGTTCACAGCCCTTCTTAGATTGCCAAGCAGTTTATCCAAAAAGGAGAAAATTGTGCATGCAAAAGCTGTGATGGCTCAACTTGGTTTAACCAAGTGCAAGGACAGCATCATTGGAGGCCCTCTGCTGAGAGGTGTTTCTGGTGGGGAGAAAAAAAGGGTTAGCATTGGACAAGAAATGCTCGTAAACCCAAGCTTGCTATTTCTGGATGAGCCAACCTCTGGCCTAGACTCAACAACAGCTCAAAGAATTGTCTCAATTTTGTGGGAGCTAGCAAATGGAGGGAGAACTGTTGTGATGACCATACATCAACCCTCAAGCAGGATTTACTGCATGTTTCACAGGGTGTTACTGCTTTCAGATGGGAACCTACTGTATTATGGAAACGGGTCTGAAGCTATGGAATATTTTACTAATATTGGATATGCCCCTACCATGGCATTGAACCCCTCAGATTTTCTTTTGGATCTTGCAAATGGTGTCTACACTGGTCAATCGAATGAGGACCAAGCCATAAATAAGAATAAATTGATTTCTGCCTATAGGAACTACTTTGATGTCAAATTTAAGCCAGTAATGCAAGATATTCCTGACTACGATAAAAGTCAGGGTAGGTTTGAAGGCATTGGATTTGGGGAATGGCCTACCAGTTGGTCACAGCAGTTTCTTGTACTGCTAAAAAGAGATGTCAAAGAGAGAAAATATGCATCATTCTCTGGCCTGAGGGTTTTTCAATTTCTTGTGGTTGCTCTTATTACAGGATTACTATGGTATAAGTGTGATATTTCACGCTTGCAGGATCAGATTGGAGTTCTATTCTTCCTTACTAGCTTTTGGGGTGGCATGCCTCTCTATCAAGCAATATTCACCTTCCCACAAGAGCTAATAATGCTGGAGAAGGAACGATCCTCTGGAATGTACAAGCTCTCTTCATACTTCATGTCAAGGATGGTGGGTGACCTGCCAATGGAGCTTGTGCTTCCTTCCATATTCCTCACCATAATCTATTGGATGATAGGGTTGAAAAACAATGTGGTAAACTTCTTATGCACACTTCTCACCATCTTACTCGATGTGTTGGTTTCACAAGGACTAGGCCTTGCCATTGGTGCTATTGTAATGGACCAGAAATCCGCAACCACACTGGCCTCAGTCATTGTGCTTACTTCTGTTCTGGTCACTGGATACTATATTCAACATGTGCCAAAATTTGTAGCATGGCTCAAGTACTTCTCCATTAACTACTACATATACCATCTCCTGATCGGGTCTCAATATGGCTCAAGTGACACATACCCATGTCATCAAGGACAGTGTTTGGTTGCAGAATATCCTTTGATAGAGCAAATGGGACTACATTTGCAAGGGAAAATCATGTCAGCACTGGCTCTATTCATAATGTTGATAGGATACAGGCTCGTGGCTTATTTGGCTTTGATGAAGATTGGGATGACTAAGAAACTGGGGTAG 1884 0.4236 MEQEMENIESQASYKATVQEEARDIFGKGNSSVTLKFHDVIYKIKNRKWGFLKNTVEEKVVLNGVTGMAQPGEILAMLGPSGSGKTTLLAALGGKLGGKLYGSITYNGKAFSNAMKRNTGFVTQDDVHYPHLTVTETLVFTALLRLPSSLSKKEKIVHAKAVMAQLGLTKCKDSIIGGPLLRGVSGGEKKRVSIGQEMLVNPSLLFLDEPTSGLDSTTAQRIVSILWELANGGRTVVMTIHQPSSRIYCMFHRVLLLSDGNLLYYGNGSEAMEYFTNIGYAPTMALNPSDFLLDLANGVYTGQSNEDQAINKNKLISAYRNYFDVKFKPVMQDIPDYDKSQGRFEGIGFGEWPTSWSQQFLVLLKRDVKERKYASFSGLRVFQFLVVALITGLLWYKCDISRLQDQIGVLFFLTSFWGGMPLYQAIFTFPQELIMLEKERSSGMYKLSSYFMSRMVGDLPMELVLPSIFLTIIYWMIGLKNNVVNFLCTLLTILLDVLVSQGLGLAIGAIVMDQKSATTLASVIVLTSVLVTGYYIQHVPKFVAWLKYFSINYYIYHLLIGSQYGSSDTYPCHQGQCLVAEYPLIEQMGLHLQGKIMSALALFIMLIGYRLVAYLALMKIGMTKKLG* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1549 627 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524
Pvu11g1549 627 Pfam ABC-2 type transporter 358 563 IPR013525 GO:0016020|GO:0140359
Pvu11g1549 627 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 284 IPR003439 GO:0005524
Pvu11g1549 627 SMART AAA_5 71 261 IPR003593 -
Pvu11g1549 627 Pfam ABC-2 type transporter 241 312 IPR043926 GO:0140359
Pvu11g1549 627 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 11 621 - -
Pvu11g1549 627 Gene3D - 45 278 IPR027417 -
Pvu11g1549 627 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 11 621 - -
Pvu11g1549 627 Pfam ABC transporter 62 212 IPR003439 GO:0005524
Pvu11g1549 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 277 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1549 Pvu-Chr11 39136641 39140022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1549 69 287 Calmodulin-binding Proteins AT2G36910 25.106 8.10e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1549 K05681 - gmx:100812397 1002.28