Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1546 ATGAGTGAAGGAAACATTTTTTGGTCTAATATGTGCAAAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTACTAGATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATACGGGTTTTCCTATTTCATCTAGTTTGGCTCATAGTTTTTCAGTTGCTTCCCCTAGTGCAAGGTACAATGCAATTGGCATCCCTTTATTACCACTCTCTAACCATTTGATTCAAGCTCCAACTCCTTCATTCGAGATTGCAACAAATGATCCCCAAAGCTATCATGATATAGTAAGAAGCATAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAACCTGCGCAAGAGATGAGAGGACACTCCATCGCCTTTCATCCACCACTTACACTTCCAACAAATCATTCAAGCACATTTCTCCATCCACAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTACACTTACACTTCCAACAAATCCTTCAAGTACTTGTTCAGTGCGCATGACAACTCATCCACACTGGAGGAGTCTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGATGACCATGATAGTGATATGCACTTGGACATTGATGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGAATTAGCAATGTAGGCACAGGTCTGTTGGATGAAATTATTGCAAGGAAAATGAAGACAAAAACTTATCTACTTTCTAATAACTCGGGAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTGTGTATAATATGTCAGGATGAATATAGAAACAAACAAGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACATGAGGAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 975 0.401 MSEGNIFWSNMCKVAVRENIDSHYLLDAYDNGMVYGRRAFNGVQHQPIHTGFPISSSLAHSFSVASPSARYNAIGIPLLPLSNHLIQAPTPSFEIATNDPQSYHDIVRSISDYRFLHPQYQAQPAQEMRGHSIAFHPPLTLPTNHSSTFLHPQYQAQPAQEMRGHSIDFHPTLTLPTNPSSTCSVRMTTHPHWRSLPPQAFLQDDDVPWLDDHDSDMHLDIDDMSYEELLELGERISNVGTGLLDEIIARKMKTKTYLLSNNSGEVASEEQENDLCIICQDEYRNKQEIGILQCGHGYHADCIRTWLHEENVCPLCKSEALTLG* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1546 324 PANTHER OS04G0185500 PROTEIN 106 322 - -
Pvu11g1546 324 ProSiteProfiles Zinc finger RING-type profile. 276 317 IPR001841 -
Pvu11g1546 324 Pfam RING-H2 zinc finger domain 270 317 IPR024766 GO:0008270
Pvu11g1546 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 321 IPR013083 -
Pvu11g1546 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 106 322 IPR045191 GO:0061630
Pvu11g1546 324 SUPERFAMILY RING/U-box 270 320 - -
Pvu11g1546 324 SMART ring_2 276 316 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1546 Pvu-Chr11 38921792 38923255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1546 210 321 C3H Transcription Factor Family AT2G15530 46.429 1.25e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1546 K19041 - pvu:PHAVU_011G149000g 654.825