Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1534 ATGGGAGTTGCTGTGAGAGACCCTCTTGCACAATTGAGTTTGCCTCCTGGATTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAATACCTCTGTCGTAAGGTTGCGGGGCACCATTTTTCTCTTCCAATCATTGCAGAAATTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGCTAAGGCTGTGTTTGGAGAAAAAGAATGGTATTTTTTCAGCCCGAGGGATAGGAAGTACCCGAATGGTACAAGACCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCCACGGGAACTGACAAGATTATCACCACCCAAGGGAGAAAAGTTGGCATAAAAAAAGCACTTGTGTTCTACGTTGGTAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGTGTTCTTGACTCTTCGCGCAAAAAAAACCTCGGAACCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAGAAGAACTCGAGTTCGCAAAAGGTTGAGGCAAATTTTTGGGCCAAAGAATGCAGCAATGGGTCATCACCTTCTTCATCTTCCCACGTGGAAGACAGGCTGGAATCGTTTCCGGAGATCGATGATCAGTGCTTCACTTTTCCGAGTGCGAACCCGATCAAAACAATGCAACAACAGGACGAGAAATACGGGTTTCAAAACATGGGATCCGAATTTTTTTCTGATTGGGTTACCGCGCCGGATCTTGATTCGATTTCCGAATTCGGGTCAGGTTGCCAAACCCAAGGGATGGTGAATTATGAGTACAATGACTTATTTGTCCCTTCTGTGCCGCCGTTCCACATGGAGTTCATGGCAGGGGCACCCACGGAGGAGGAAGTTCAAAGCAGTGTGAGAACCCAACGGGCTGACGGAGAGGGATATTTTCAGCAGAACCCGAATGCCCGAAATTTGTCTGGCTCGAACGAATCGCTTGGATTCGGGTTCATGGATCAGCAAATAAGGTTCGGGTTACGGAAATAG 1008 0.4663 MGVAVRDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITTQGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRVLDSSRKKNLGTTKLDDWVLCRIYKKNSSSQKVEANFWAKECSNGSSPSSSSHVEDRLESFPEIDDQCFTFPSANPIKTMQQQDEKYGFQNMGSEFFSDWVTAPDLDSISEFGSGCQTQGMVNYEYNDLFVPSVPPFHMEFMAGAPTEEEVQSSVRTQRADGEGYFQQNPNARNLSGSNESLGFGFMDQQIRFGLRK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1534 335 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Pvu11g1534 335 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pvu11g1534 335 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Pvu11g1534 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 313 - -
Pvu11g1534 335 PANTHER NAC TRANSCRIPTION FACTOR 56 1 313 - -
Pvu11g1534 335 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1534 Pvu-Chr11 38427431 38429252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1534 1 325 NAC Transcription Factor Family AT1G52890 55.882 2.57e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu11g1534 NAM 7.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1534 - - gmx:100811301 574.704