Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1502 ATGAGAAGAAGAGCCAGAGTGCTTCTTAGTCTCTCTACTTCTCTGCTCTCACCGGTAAAGCACAACCCTTTAGCGAAATCAACACCACCCACTTCTTTATTTCGAAGTAGCATCACATTCTCAACTTCCTCCTCCATAAACCCTCCTATTGAAGAAGCAAAGACTTCATCGTCCACGTCCCGAAGGGATTCATTGATTTTAGAACAGTTCAAGCAGAGAAAACTCAAAGGGTCCCCTAAAGACTCAAAGGGTACCCCTCAAGTGGGTTCAACTTCAGTTCCATTAAGTTCAGATGCTTATACTGAGAAGGTGGTCCAAAAGGGTGTGCAGAATGAGGATGAACCCACCATTGTGGTTAGAAGTTTCAAGGAGTTGGGTGTTAATGAGGAGCTTGTCGAGGTAATGGAGGAGATTGGGGAGTTTATTCCCAGTGAGATACAGTGTGTGGTTATTCCTGCTATCTTGGAAGGGAAGAGTGTGTTGCTGAGTTCACCATCTGAACCTGACAGAACTTTGGCCTTCTTGTTGCCCCTTATTCAGTTGCTAAGACGGGATAGAGAGTTGCTTGGTTCAAATTCAAAACATCCGCAAGCCATTGTGCTTTGTGCTACGGAGGAGAAAGCTGAAAAGTGCTTCAATGCTGCTAAATATATCATCCATAACACAAAATTGAAGTCTGCAAAGGATTGTGCTTCACCAGATGATGGGCAGTCGCAAGCCTCAATTGGCCTAGTGATAGGAACTCCTTGTGAGATTCTTCAATATATTGAAGAGCAGAGCATTGTTCCTTCTGAAATAAGATACTTGGTGTTGGAAGAGGCAGATTGCATGCTTGGTAGTGGCCTTGGTCCTGAAATCCATAAAATTCTCATACCATTACAAGATCATGAATCAAAATCTGCTGTCAAAAGATTACAAACTATTTTGGCCATTTCAACCATGGCTGAGGTTTTGGGTGAACAATCCCCTGTTGTAAAGTATCTCGAGTGCCATCATGCAGGGAATATTTCTGCAATGTCTTTAGAAATGGAACAAAGTGAAGTCTTTCATTTCACAGAGTCTCTTCATGCTCTTAAGAAAAAAATAGCAGAGGCCATGGATTCCCTTTTGCAACAAGAATAA 1122 0.4242 MRRRARVLLSLSTSLLSPVKHNPLAKSTPPTSLFRSSITFSTSSSINPPIEEAKTSSSTSRRDSLILEQFKQRKLKGSPKDSKGTPQVGSTSVPLSSDAYTEKVVQKGVQNEDEPTIVVRSFKELGVNEELVEVMEEIGEFIPSEIQCVVIPAILEGKSVLLSSPSEPDRTLAFLLPLIQLLRRDRELLGSNSKHPQAIVLCATEEKAEKCFNAAKYIIHNTKLKSAKDCASPDDGQSQASIGLVIGTPCEILQYIEEQSIVPSEIRYLVLEEADCMLGSGLGPEIHKILIPLQDHESKSAVKRLQTILAISTMAEVLGEQSPVVKYLECHHAGNISAMSLEMEQSEVFHFTESLHALKKKIAEAMDSLLQQE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1502 373 Coils Coil 355 373 - -
Pvu11g1502 373 SMART poly_2 310 372 IPR002004 GO:0003723
Pvu11g1502 373 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 258 373 IPR002004 GO:0003723
Pvu11g1502 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 314 IPR027417 -
Pvu11g1502 373 MobiDBLite consensus disorder prediction 74 94 - -
Pvu11g1502 373 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Pvu11g1502 373 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 332 IPR014001 -
Pvu11g1502 373 Pfam DEAD/DEAH box helicase 145 313 IPR011545 GO:0003676|GO:0005524
Pvu11g1502 373 Gene3D - 95 319 IPR027417 -
Pvu11g1502 373 SUPERFAMILY PABC (PABP) domain 314 368 IPR036053 GO:0003723
Pvu11g1502 373 Gene3D - 320 372 - -
Pvu11g1502 373 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 8 372 - -
Pvu11g1502 373 Pfam Poly-adenylate binding protein, unique domain 323 367 IPR002004 GO:0003723
Pvu11g1502 373 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 8 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1502 Pvu-Chr11 37121624 37127401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1502 119 289 Eukaryotic Initiation Factors Gene Family AT3G19760 24.000 8.82e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1502 - - vra:106768009 621.313