Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1500 ATGGTAAGTGGTGGTAGCCGGATTAGGCTTCAGGAGGATTCCCTTAACAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAGCATATTGAAGAGGGAAACATGGTCTATGGTGACATCAAATACTTGGTATTAGATGAGGCAGACACAATGTTTGATCGGGGTTTTGCTCCTGATATGCGCAAGTTTCTGGGCCCATTAAATAGTCGTGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGTGTGTGTGCACCATAATCTTGTTGGCTACATGCAAATTAAATACTAA 327 0.4373 MVSGGSRIRLQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFAPDMRKFLGPLNSRASKPDGLGFQTILVTATMTKVCVHHNLVGYMQIKY* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1500 108 Gene3D - 1 105 IPR027417 -
Pvu11g1500 108 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 93 IPR014001 -
Pvu11g1500 108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 94 IPR027417 -
Pvu11g1500 108 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 94 - -
Pvu11g1500 108 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 1 94 - -
Pvu11g1500 108 Pfam DEAD/DEAH box helicase 3 93 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1500 Pvu-Chr11 37051493 37051901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1500 4 59 Eukaryotic Initiation Factors Gene Family AT3G13920 42.857 1.04e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1500 - - pvu:PHAVU_011G144600g 221.861