Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1466 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCCGTCCCCGATGCCTCCTTCACCGTCCCTTCCTCCGCCTTCACATGGCCCCCTAACGCCTTGAACGCCACTTCCAATGTCGGTGTTGAAATTGATGGCTCACTGGCGGATTCTGATGGTCTCAAGGAGGCTGGCTCAAAAAAAAGGGTTAGATCTGAGACATGTGCTGCTGCTACTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGAAAGGCCTACGAAAACTGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACACAGTTACGGGGTGAAGCGCAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGAGATGAGAAACAGATGCTCAAGGCAGAGAAGGAGAAGTTGGAGCAGCAGCTGAAATCTTTGAATGCACAACCCAATTTCATGCCTCCCCCTGCTGCTATCCCTGCCGCATTTGCGGCCCAAGGCCAAGCCCATGGAAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCGCCAGCTGCAGTGGATACTTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 714 0.493 MVSRENTNWLFDYGLIDDIPVPDASFTVPSSAFTWPPNALNATSNVGVEIDGSLADSDGLKEAGSKKRVRSETCAAATSSKACREKLRRDKLNDKFVELGSILEPERPTKTDKAAILIDAVRMVTQLRGEAQKLKDSNQGLQEKIKELKAEKNELRDEKQMLKAEKEKLEQQLKSLNAQPNFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1466 237 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 237 - -
Pvu11g1466 237 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Pvu11g1466 237 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 180 - -
Pvu11g1466 237 SMART finulus 82 133 IPR011598 GO:0046983
Pvu11g1466 237 CDD bHLH_AtILR3_like 81 156 - -
Pvu11g1466 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Pvu11g1466 237 Gene3D - 66 125 IPR036638 GO:0046983
Pvu11g1466 237 Coils Coil 124 179 - -
Pvu11g1466 237 PANTHER BHLH TRANSCRIPTION FACTOR 1 237 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Pvu11g1466 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1466 Pvu-Chr11 33734065 33737984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1466 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.167 1.44e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g1466 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1466 - - pvu:PHAVU_011G141300g 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1466 11 33734065 33737984 Pvu11g1466 11 33734065 33737984 ECH
Pvu5g0942 5 26093746 26096198 Pvu11g1466 11 33734065 33737984 PCT