Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1439 ATGGATGTAAAGTTTAGCAGAATGGATAAGAAAATTGGTGGGACAACTTGTGTCTACTGGCGAGCGGGGAGATGCAACAGAAATCCGTGCAAATTTCTACACAGAGAAACATCCTCATTACATGTTAATGCCAGAAGCAAATATTGTGGAAAAAAATCTCATTCATCCTCTAATAATACCTCCAAATATAACCCCAAGAAAAAATTGGTTAGAAAGAGAGGAGATGGGACAAATGTTGTTAAGGTGTCTAAGAAATCATCTACAAGTATATGCAAATATTGGACCAACAACAACTGTGTGTACGGTGAACAATGCCCTCATTTACATTCATGGTTTCAAGGTGATGGGTTTTCCACATTAAAAAAACTTCACCAACACAAAAAGGCTATCACCGGAATTACGCTTCTGGCTGGAACCAACAAACTTTATTATGGAAGCACCGATGGAACCGTTCGGATATGGGATTGCCATACAGGTCAATGTCTTAAAGTCCTAAATTTTGGCACCCAAGTTAACTCTTTGATAAGTGAGGGGCCATGGGTTTTTGTTGGTTTGAACAATGTTATCAAGGCTTTGAATACTAAGACCAATTTGGAGTTTACTCTTGATGGACCCAAAGGAAGGATCCTTCACATGACTGTTGGTAACAACATCCTTTTTGCCGGGGCAGAGGATGGTGTCATTACTGCCTGGAGAGAAAGCTCTGAAGTTAAGTCTCCTTTTGAATTAGTTGCCTCACTAACTGGTCACACTAAATCTGTGGTTTGCCTAACTATTGGACGCAAGATGTTGTACTCCGGATCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAATGTACAATGACACTCAATGAACATAATGATGTAGTCACATCCCTTATTTGTTGGGACGAATTTTTGCTGTCAAGTTCATCTGATGGCACAATTAAGATCTGGGCATGCATGGAAGAAGGAACTCTGACTGTGCTATATACACACATTGAACAAAGTGGCATTGTCTCACTTTTTGGGATGCCTAATGCAAAAGGCAAGCCAATATTGTTTTCCTCTTGTAAAGACAATTCAGTACGCATGTATGAATTGCCATCATTTTCAGAGAGGGGTCTTTTATATGCTAAGAAAGACATTGCATCTTTCGAGTTAGGACATGATGGACTCTTCTTCACTGGCGATGACACTGGTTTGCTTCGTGTATGGAAGTGGAATGAGTTACCTAAGATGACATCTGATTGA 1245 0.4008 MDVKFSRMDKKIGGTTCVYWRAGRCNRNPCKFLHRETSSLHVNARSKYCGKKSHSSSNNTSKYNPKKKLVRKRGDGTNVVKVSKKSSTSICKYWTNNNCVYGEQCPHLHSWFQGDGFSTLKKLHQHKKAITGITLLAGTNKLYYGSTDGTVRIWDCHTGQCLKVLNFGTQVNSLISEGPWVFVGLNNVIKALNTKTNLEFTLDGPKGRILHMTVGNNILFAGAEDGVITAWRESSEVKSPFELVASLTGHTKSVVCLTIGRKMLYSGSMDQSIKVWDMDTLQCTMTLNEHNDVVTSLICWDEFLLSSSSDGTIKIWACMEEGTLTVLYTHIEQSGIVSLFGMPNAKGKPILFSSCKDNSVRMYELPSFSERGLLYAKKDIASFELGHDGLFFTGDDTGLLRVWKWNELPKMTSD* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1439 414 PANTHER - 9 409 IPR044715 -
Pvu11g1439 414 SUPERFAMILY WD40 repeat-like 93 405 IPR036322 GO:0005515
Pvu11g1439 414 SMART WD40_4 240 277 IPR001680 GO:0005515
Pvu11g1439 414 SMART WD40_4 195 232 IPR001680 GO:0005515
Pvu11g1439 414 SMART WD40_4 367 404 IPR001680 GO:0005515
Pvu11g1439 414 SMART WD40_4 280 317 IPR001680 GO:0005515
Pvu11g1439 414 SMART WD40_4 116 155 IPR001680 GO:0005515
Pvu11g1439 414 SMART WD40_4 323 364 IPR001680 GO:0005515
Pvu11g1439 414 MobiDBLite consensus disorder prediction 49 64 - -
Pvu11g1439 414 Gene3D - 10 110 - -
Pvu11g1439 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 155 - -
Pvu11g1439 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 286 IPR001680 GO:0005515
Pvu11g1439 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 280 - -
Pvu11g1439 414 MobiDBLite consensus disorder prediction 49 76 - -
Pvu11g1439 414 Pfam WD domain, G-beta repeat 119 155 IPR001680 GO:0005515
Pvu11g1439 414 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Pvu11g1439 414 Pfam WD domain, G-beta repeat 282 316 IPR001680 GO:0005515
Pvu11g1439 414 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Pvu11g1439 414 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Pvu11g1439 414 PRINTS G protein beta WD-40 repeat signature 304 318 IPR020472 -
Pvu11g1439 414 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Pvu11g1439 414 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Pvu11g1439 414 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 409 - -
Pvu11g1439 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 164 IPR001680 GO:0005515
Pvu11g1439 414 Gene3D - 215 412 IPR015943 GO:0005515
Pvu11g1439 414 Gene3D - 111 200 IPR015943 GO:0005515
Pvu11g1439 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 316 IPR001680 GO:0005515
Pvu11g1439 414 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Pvu11g1439 414 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Pvu11g1439 414 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1439 Pvu-Chr11 33052027 33054060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1439 122 403 Acyl Lipid Metabolism Gene Families AT3G18860 23.871 2.67e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu11g1439 WD40 0.0015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1439 - - gmx:100787799 620.542