Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1422 ATGTATTCAAAATACATAATCATAATCTCCACGTTATCTTCCTACAATGTGTGGGTCTCTTTGGAACAACTAACCAAGCATGGCTATCATACTATAGAGCAACCATCTTCACTTCACACTTCTCTCTTTCTATGTGTATGTGTCCCACTCACAACATTTCTTATACAAAAATCCCAATCATATCTTCTTACAATTTCATTCCCTCACACAATCCACCCTCAATCAAACCATCCCAACAAAAAAGAAATCCATTTCTTTCTCTTAATTTTTCTCTCCACCACCATGGCTACTACAATAACAGAGCAAGAGTCCTCATCACGTGCCTCGCACGTGCTCCACTACACCCCCACCCCTATCACCACCTCCGACGAGGAGGAGGAGGAGGAGGAGGAGCATTTAGAAGGCAACGAGAACGAGCCCACCGGCGCGGGGTGGCGGTCAACAGCGGAGTGCGGCGGGGATGGGCGGAGAACGTTGGGGAAGGTGTTGGACCCGAGGGCGAAGTGGGTCCAGGAATGGAACAGAGTGTTCCTGCTAGTGTGCGCCGCGGGGTTGTTCGTCGACCCTCTGTTCTTCTACGCGCTCTCCGTTAGCGACTCGTGCATGTGCGTGTTCGTTGACGGGTGGCTCGCCGTTACCGTGACGGTGCTGCGGTGCATGACGGACGCGCTGCACCTGTGGAACATGGTGCTCAGAATGAAGATGGCCAAACGCACGTTCGGGTTGGGCGCCGCCGCGGGACTCAGAGACACTCGGCCGCGCACTGTCGCGCTAGGGTATCTCAAGTCACGGACGGGATTCATTTTTGATTTGTTCGTGATTCTTCCTCTGCCACAGATTGTGCTTTGGGTGGCAATCCCGTCGTTGTTGGAGAAAGGTTCAGTGACGTTGGTGATGACAGTGTTCTTAATTATATTTCTGTTCCAATACCTTCCCAAAATTTATCATTCTGTTTGCCATCTGCGACGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATAGCTTATTTTGTTGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGCTGGGGATTCAAAGGGCAGCAAAGTGTCTGAAAGTGCAGTGTGGAAAAACAAGTGGTTGTGGCATGAACATTCTGTCATGTCAAAGCCCTATATATTATGGAAGCAATAAGAGTTTGTTGGTTAGGGATAGAGCAAGGTTGGCATGGGCAGAGAACAGAGAAGTGAGGCAAACATGCTTAAATGGCCCTGACAACTACAACTATGGAGCTTATAGATGGACCGTTCAGCTTGTCAAAAATAATAATCGTTTGGAAAAGATTCTTTTCCCTATCTTCTGGGGCCTAATGACTCTAAGCACTTTTGGAAACCTAGAAAGTACAACAGAATGGCTAGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTTGTAACTATGTTGATCGGAAACATCAAGGTATTTTTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAGTTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGAAGGTTGCCACAAGGGTTTCGACAACGTGTGCGTAACTATGAGAGGCATCGTTGGGCTGCCATGCGAGGTGTTGATGAATACGAGATGACCAGAAATCTTCCTGAAGGGTTAAGAAGAGACATCAAGTACCATCTTTGTCTTGACTTGGTTAGACAGGTGCCTCTGTTTCAACACATGGACGATCTGGTTCTCGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAGAGAATGCTGTTTGTAGTAAGGGGCCACCTTCAAAGCAGCCAAGTTCTAAGGGATGGTGTGAAGAGTTGCTGCATGTTAGGGCCAGGAAACTTCAGTGGTGATGAGCTTCTTTCATGGTGTTTGAGGAGACCCTTCATAGAACGTCTTCCACCATCTTCATCCACACTCATCACATTGGAAACCACAGAGGCTTTTGGCCTTGAAGCCGAGGATGTGAAGTACGTGACACAACATTTCAGGTACACATTTGTTAAGGAAAAGGTGAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCTTGGAGGAGGTACAAGCATAGGTTGACTTTGACCTCTCTGTCCTTCATAAGGCCTAGGAGACCCTTGTCAAGGTCCTCTTCCATGGGAGAAGATAGGCTTCGCCTCTACACTGCTTTGTTGACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2322 0.4746 MYSKYIIIISTLSSYNVWVSLEQLTKHGYHTIEQPSSLHTSLFLCVCVPLTTFLIQKSQSYLLTISFPHTIHPQSNHPNKKEIHFFLLIFLSTTMATTITEQESSSRASHVLHYTPTPITTSDEEEEEEEEHLEGNENEPTGAGWRSTAECGGDGRRTLGKVLDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHLWNMVLRMKMAKRTFGLGAAAGLRDTRPRTVALGYLKSRTGFIFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVQCGKTSGCGMNILSCQSPIYYGSNKSLLVRDRARLAWAENREVRQTCLNGPDNYNYGAYRWTVQLVKNNNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERHRWAAMRGVDEYEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1422 773 MobiDBLite consensus disorder prediction 121 135 - -
Pvu11g1422 773 Pfam Ion transport protein 173 493 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu11g1422 773 MobiDBLite consensus disorder prediction 117 152 - -
Pvu11g1422 773 Gene3D Jelly Rolls 574 692 IPR014710 -
Pvu11g1422 773 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 123 770 - -
Pvu11g1422 773 SUPERFAMILY cAMP-binding domain-like 502 690 IPR018490 -
Pvu11g1422 773 ProSiteProfiles cAMP/cGMP binding motif profile. 576 686 IPR000595 -
Pvu11g1422 773 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 123 770 - -
Pvu11g1422 773 CDD CAP_ED 576 682 IPR000595 -
Pvu11g1422 773 Pfam Cyclic nucleotide-binding domain 597 684 IPR000595 -
Pvu11g1422 773 Gene3D Helix hairpin bin 501 567 - -
Pvu11g1422 773 SUPERFAMILY Voltage-gated potassium channels 165 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1422 Pvu-Chr11 32073084 32082051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1422 144 772 Ion Channels AT5G54250 78.425 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1422 K05391 - gmx:100796761 1224.15