Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1411 ATGGCTTCCAACAAAATCCAACGCAGCTCTTCCTCACACGCTAAGAATTTTGACGTGTTTGTTAGCTTTAGAGGTGCAGATACTCGTAACGGTTTCACAAATCATCTTTTTGCAGCCCTTCAAAGAAAAGGAGTTGTCGCCTTTAGAGATGACCGAACAATCGAGAAAGGGGATTTCCTGGAGTCTGAGCTCTTGTACGCTATTGAAGGGTCAGAAGTTTTCATAATTGTCTTCTCAAAGGACTATGCATCATCCACATGGTGCATGAAAGAGCTTACAAAGATCGTTGATTGGGTGAAAGAAAAAGGTCGAAAATTGCTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGAAAGCAGAGTGGAGAGTTTGCAAAAGCTTTTGATGAACACGAAGAAAGGTTCAAAGATGACTTGGAAATGGTAAAAAAATGGAGGGAAGCTCTAAAAAGGAGTAGCGGTCATTGTGGGTGGGATGTCCAAAATAAGCAACAATATGAAGAAATTGAAAAGGTTGTTGAAAGGGTAATCGACATATTGGGTCGTAATCAAATTTGGAGTTTTGGAGATGATTTAGTTGATATGCATTCTCGTGTTAAACAATTGGAAGAACTTTTAGATTTGAGTGCAAATCATATTGTTCGCCTTGTTGGAATTTATGGAATGAGTGGAATAGGAAAGACGACACTTGCAAATACATTGTTTAAAGAAATCTCTCCTCAATACGATGCTTGGTGTTACATTGATGATTTAAGTAAAATTTATTTGGATCTTGGAGTAACAAGTGCACAAAAACAACTTCTTTGTCAAGTTCTAAATCAAGGAAATATGGAGATACACCATGTTTCCCATGGAACTATGTTGATGAAAAATAGGCTACGTCACTTAAAGACGCTTATTGTTCTTGATAATGTTGATCAGGTTGAACAGTTAGAGAAATTGGGTTTGCATCCTGAATATCTAGGTGCAGGTAGTAGGATTATTATAATTTCTACCGATTGTCGTATCTTACAAAATTATG 1024 0.375 MASNKIQRSSSSHAKNFDVFVSFRGADTRNGFTNHLFAALQRKGVVAFRDDRTIEKGDFLESELLYAIEGSEVFIIVFSKDYASSTWCMKELTKIVDWVKEKGRKLLPIFYDVTPSEVRKQSGEFAKAFDEHEERFKDDLEMVKKWREALKRSSGHCGWDVQNKQQYEEIEKVVERVIDILGRNQIWSFGDDLVDMHSRVKQLEELLDLSANHIVRLVGIYGMSGIGKTTLANTLFKEISPQYDAWCYIDDLSKIYLDLGVTSAQKQLLCQVLNQGNMEIHHVSHGTMLMKNRLRHLKTLIVLDNVDQVEQLEKLGLHPEYLGAGSRIIIISTDCRILQNY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1411 341 Gene3D - 10 185 IPR035897 -
Pvu11g1411 341 Pfam NB-ARC domain 200 330 IPR002182 GO:0043531
Pvu11g1411 341 Gene3D - 186 341 IPR027417 -
Pvu11g1411 341 SMART till_3 16 156 IPR000157 GO:0007165
Pvu11g1411 341 PRINTS Disease resistance protein signature 217 232 - -
Pvu11g1411 341 PRINTS Disease resistance protein signature 293 307 - -
Pvu11g1411 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 339 IPR027417 -
Pvu11g1411 341 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Pvu11g1411 341 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Pvu11g1411 341 Pfam TIR domain 16 175 IPR000157 GO:0007165
Pvu11g1411 341 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 12 188 - -
Pvu11g1411 341 PANTHER TMV RESISTANCE PROTEIN N-LIKE 12 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1411 Pvu-Chr11 31220457 31221707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1411 4 338 WRKY Transcription Factor Family AT4G12020 28.402 6.01e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1411 - - vra:106780706 565.459