Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1390 ATGGAAATGGAAGAATTTTTGTGGGGTGTTGACATTGATGGGGATGTCTCTAAGGGGAATAGTGATGGTTTTGAAGGAAGCAATGGAGTGATTGGAAGTGGGTGTGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAAGCTCCTGTGAAATTGGAAAGGAAAGGGGTGTCCACTGAGAGAAGCACTGAAGCTTTGAAGAACCATAGCGAGGCAGAGAGGAGGAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTCATTCCAGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATTACACATCTGAAAGAGCTGAAAAGGAATGCAGCAGAAGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCTGGTCTATTGTCTGATATAAGACAAGCACTAGATTCTCTTCATCTTATGATAACAAGGGCAGATATTGCAACCTTAGAAGGCAGGATGAAGAATGTGTTCGTGATAATTAGCTGCAAAGAACACAACTTTGAAGATGCTTCATACCGTCAATTTCTTGCTGGTTCTGTTCACCAAGCTCTGAAGTCTGTGCTCAATAGATTTTCTGTTTCACAGGACATTTTAGGAACCAAGAAAAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGAAGATTTCTTGTAA 777 0.408 MEMEEFLWGVDIDGDVSKGNSDGFEGSNGVIGSGCGSSFSLVLDRERGELVEAPVKLERKGVSTERSTEALKNHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVITHLKELKRNAAEACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDSLHLMITRADIATLEGRMKNVFVIISCKEHNFEDASYRQFLAGSVHQALKSVLNRFSVSQDILGTKKRRRISIFSSSSLEDFL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1390 258 Gene3D - 63 126 IPR036638 GO:0046983
Pvu11g1390 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 122 IPR036638 GO:0046983
Pvu11g1390 258 CDD ACT_UUR-ACR-like 157 228 - -
Pvu11g1390 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Pvu11g1390 258 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 257 - -
Pvu11g1390 258 PANTHER TRANSCRIPTION FACTOR BHLH30 3 257 IPR045847 GO:0003700|GO:0006355
Pvu11g1390 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Pvu11g1390 258 SMART finulus 75 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1390 Pvu-Chr11 30669585 30671475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1390 23 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.667 1.02e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g1390 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1390 - - gmx:100788819 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1390 11 30669585 30671475 Pvu11g1390 11 30669585 30671475 ECH