Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1344 ATGGACTCTTCTCCAACTCCCCTACCATCAATGTCTTCACTTTCCACAAACTTTTTGCCAAGAGAGTCCTTTTACAAGAGGTTAAGTTTTAGTAATCGGTTTGTTATAGTCCTCCTCTTCGTCATCCTATTCTTCATCGTACTCGTATATATTTACCTCCAATATTCCTCCTCATTCGACCCCGAATCCGGTGACATCCATGGACAAGCGGCGTTGAGGTCTCCGGTTGTGGTGACGGTGGTGGCAGAGACTGCTGGAAAATGCCCAATATGTTTGGAGGAGGTGGGAGAGGGAGAGCCCGTAAAAAAGATTGCATACTGCAAGCATATATTTCACGCGGAATGCATTGACAAGTGGTTGGAGACCAAGGTCACGTGCCCATATGCCGATACTACGAGACGAGTCCAGAGATGGAGTTGGTGA 423 0.4704 MDSSPTPLPSMSSLSTNFLPRESFYKRLSFSNRFVIVLLFVILFFIVLVYIYLQYSSSFDPESGDIHGQAALRSPVVVTVVAETAGKCPICLEEVGEGEPVKKIAYCKHIFHAECIDKWLETKVTCPYADTTRRVQRWSW* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1344 140 PANTHER RING FINGER DOMAIN-CONTAINING 68 128 - -
Pvu11g1344 140 ProSiteProfiles Zinc finger RING-type profile. 88 127 IPR001841 -
Pvu11g1344 140 SUPERFAMILY RING/U-box 87 128 - -
Pvu11g1344 140 Pfam Ring finger domain 87 128 IPR001841 -
Pvu11g1344 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 132 IPR013083 -
Pvu11g1344 140 PANTHER RING-H2 FINGER PROTEIN ATL40 68 128 - -
Pvu11g1344 140 SMART ring_2 88 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1344 Pvu-Chr11 28919440 28919862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1344 25 127 Rapid Response to Elicitors AT3G05200 31.250 1.15e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1344 - K19038 pvu:PHAVU_011G115900g 191.815