Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1341 ATGGATCCCAATACTAAACTTCTACCAAGTCAGGGGGAACTCCTTTTAGATCCTGAGAGTTCATTTTTCAGATCCAGTTATAAGTCAGATGGTGCCTCCTCATCAGAAGTTCGTAGAATACGAAGAAGAAGTATCAGCATTACACCCGAGATTGGTGATGATATTGCAAGGGCGGTACGGGCAATGAATGAAACACTAAAGCAAAATCGTCTTTTGAGTGAGCAAGGGGTAGTTGACAGTTCATTGTTCCATTTGCCAAATGATAGAGCCGGCAGTATGGATCTTCAGAAAAAAAAGTCAAGTTTCCATCTTGATGGGCATCAAGAGAGGTCCCCTTTGTATTCGCCCCACTGTGACCCTGTAACGTCTCAAAAGGCAATGTCATTACCCTCTTCCCCGCACGATTATAGAGGACAAGCGTCTGAGAGAAGTGAAGTGTCAGGATATCCAATGAATGATGAACTGGAGTCTACTTGGAATAAAGTCCTTGAATCACCAATGTTCAATGATAGACCTCTGTTGCCATATGAAGAATGGAATATCGATTTCACAGAATTGACTGTTGGAACTCGCGTTGGGATTGGGTTCTTTGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTCGCAATCAAAGTTTTCCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCTAATGTTATCTTATTTCTTGGTGCATGCACAAAGCCCCCACGCTTGTCAATGGTAACTGAATACATGGAGATGGGCTCTTTGTTTTACTTGATTCATGTGAGTGGTCAAAAGAAGAAGCTTAGTTGGCGGAGAAGACTAAAGATGTTGCGGGACATTTGCCGGGGCCTAATGCACATACATCGTATGAAGATTATTCACCGTGATGTGAAAAGTGCAAATTGTCTTGTGGACAAGCATTGGACGGTGAAAATATGTGATTTTGGACTTTCAAGAATAATAGAAGATTCTCCCATGAGAGATTCCTTGTCAGCTGGAACCCCGGAATGGATGGCTCCTGAACTTGTTCGAAATGAACCATTCACTGAAAAATGTGATATATTCAGCCTGGGGGTCATAATGTGGGAGCTCTGCACCTTGAATAGGCCATGGGAAGGCGTGCCTCCGGAGAGGGTGGTTTATACCGTTGCTAACGAGGGTTCTCGATTGGATATTCCTGAAGGCCCGCTAGGCAGGCTGATTTCAGAGTGTTGGGCGGAACCACATGAACGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGGTGGACATCCAGTACTCTCTGTTTTGA 1329 0.4439 MDPNTKLLPSQGELLLDPESSFFRSSYKSDGASSSEVRRIRRRSISITPEIGDDIARAVRAMNETLKQNRLLSEQGVVDSSLFHLPNDRAGSMDLQKKKSSFHLDGHQERSPLYSPHCDPVTSQKAMSLPSSPHDYRGQASERSEVSGYPMNDELESTWNKVLESPMFNDRPLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIIEDSPMRDSLSAGTPEWMAPELVRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYTVANEGSRLDIPEGPLGRLISECWAEPHERPSCEEILSRLVDIQYSLF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1341 442 MobiDBLite consensus disorder prediction 118 145 - -
Pvu11g1341 442 CDD STKc_MAP3K-like 192 434 - -
Pvu11g1341 442 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 21 440 - -
Pvu11g1341 442 PRINTS Tyrosine kinase catalytic domain signature 260 273 IPR001245 GO:0004672|GO:0006468
Pvu11g1341 442 PRINTS Tyrosine kinase catalytic domain signature 299 317 IPR001245 GO:0004672|GO:0006468
Pvu11g1341 442 PRINTS Tyrosine kinase catalytic domain signature 346 356 IPR001245 GO:0004672|GO:0006468
Pvu11g1341 442 PRINTS Tyrosine kinase catalytic domain signature 365 387 IPR001245 GO:0004672|GO:0006468
Pvu11g1341 442 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 21 440 - -
Pvu11g1341 442 ProSiteProfiles Protein kinase domain profile. 186 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1341 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Pvu11g1341 442 SUPERFAMILY Protein kinase-like (PK-like) 160 434 IPR011009 -
Pvu11g1341 442 Gene3D Phosphorylase Kinase; domain 1 179 264 - -
Pvu11g1341 442 Pfam Protein tyrosine and serine/threonine kinase 187 434 IPR001245 GO:0004672|GO:0006468
Pvu11g1341 442 SMART serkin_6 186 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1341 442 ProSitePatterns Protein kinases ATP-binding region signature. 192 213 IPR017441 GO:0005524
Pvu11g1341 442 Gene3D Transferase(Phosphotransferase) domain 1 265 441 - -
Pvu11g1341 442 MobiDBLite consensus disorder prediction 118 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1341 Pvu-Chr11 28778777 28784293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1341 7 441 MAP Kinase Kinase Kinase AT3G58640 72.248 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Pvu11g1341 PK_Tyr_Ser-Thr 1.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1341 - - pvu:PHAVU_011G129600g 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1341 11 28778777 28784293 Pvu11g1341 11 28778777 28784293 ECH
Pvu5g0982 5 28346580 28371440 Pvu11g1341 11 28778777 28784293 PCT