Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1333 ATGTCCGGTGTGGGACCTGTTTCTCAGGATTGGGAACCCGTCGTCCTCCGCAAGAAAGCTCCCACCGCCGCAGCGAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGATACCCAAAAAAAATATAATGCTGGGACTAACAAAGCAGCCTCTAGCAGCACTTCATTGAACACTAAGAGGCTTGATGAGGATACAGAGAATCTAACTCATGAGAAAGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGGACAAGAAACTTACTCAGTCTCAGCTTGCTCAAGCAATCAACGAGAAACCTCAAGTGATCCAGGAATACGAATCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAACTAAACTGCGTGGCAAGAAATAA 429 0.4848 MSGVGPVSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGAEIDTQKKYNAGTNKAASSSTSLNTKRLDEDTENLTHEKVPTELKKAIMQARMDKKLTQSQLAQAINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1333 142 MobiDBLite consensus disorder prediction 1 73 - -
Pvu11g1333 142 MobiDBLite consensus disorder prediction 45 64 - -
Pvu11g1333 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Pvu11g1333 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Pvu11g1333 142 SMART mbf_short4 86 141 IPR001387 -
Pvu11g1333 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Pvu11g1333 142 Gene3D - 71 142 IPR010982 GO:0003677
Pvu11g1333 142 MobiDBLite consensus disorder prediction 21 43 - -
Pvu11g1333 142 CDD HTH_XRE 85 138 IPR001387 -
Pvu11g1333 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Pvu11g1333 142 Pfam Helix-turn-helix 87 138 IPR001387 -
Pvu11g1333 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1333 Pvu-Chr11 28462216 28465119 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Pvu11g1333 MBF1 6.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1333 K03627 - gmx:100500420 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1333 11 28462216 28465119 Pvu11g1333 11 28462216 28465119 ECH
Pvu5g0977 5 28200798 28204204 Pvu11g1333 11 28462216 28465119 PCT