Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1309 ATGAGCCGCCACAGGCAGAACTTCACACCTCTGCCACGGCAAAGAGGTTTTAGATCCTATGATGGCAGTACTTACAATCATCATGAATCCAATGAAGTGCCTGTGTTTTACAGATCTAACTCTGCTCATGCCACCGATGAAAGAACTGCAGATGTAATACCTCGACAACGGGTTTGGGAATTCAGACATCCTGTAGGATTCCAACACAGTATACCTTATTTTCCAGCAGCAGCAGCACCTAGAAGACAACAAATTCATATTCACAATGAGGATATGGTAAGGCTCAGAGATATTTTCCTTCAGCCTCCTTCAAGATATACATTCCAAACAACCACACAAGCTCCCCCAGTGGTTGAAATTTCCAAATCAACAGCTTTGAGCAAGCTTAAGAAAGTAGTGTATGACCATCACCCTCCCCTAAAGAGGTATGCTACGAACCTGGGTTTATATTACAGAAACAATGCTGAAGAAAAACCTTTGAAAGAGAAGGAGAAGGAAAAAGATGAAGATGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTAAGACTGGTGAAGAGGTGATGCTCACTCGATGCAAGCACATGTTTCATGAGGATTGCATAGTGCCATGGCTAACAACTAAGGGTCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATGGGATGTGGGAACCCTTCATCCTTCAACAACAATGACTTGGCCACTTTGGAATCTAACAACCTCGTTAATGGAGAGTTTTTTTCAGTTTTGAGGGCCATGGATGAAGCTTTTCAATTGGGCAGTAGGACTTAA 795 0.4264 MSRHRQNFTPLPRQRGFRSYDGSTYNHHESNEVPVFYRSNSAHATDERTADVIPRQRVWEFRHPVGFQHSIPYFPAAAAPRRQQIHIHNEDMVRLRDIFLQPPSRYTFQTTTQAPPVVEISKSTALSKLKKVVYDHHPPLKRYATNLGLYYRNNAEEKPLKEKEKEKDEDGKRCAICLEDFKTGEEVMLTRCKHMFHEDCIVPWLTTKGQCPVCRFVICEMGCGNPSSFNNNDLATLESNNLVNGEFFSVLRAMDEAFQLGSRT* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1309 264 Pfam Ring finger domain 173 215 IPR001841 -
Pvu11g1309 264 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g1309 264 CDD RING-H2_PA-TM-RING 174 215 - -
Pvu11g1309 264 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Pvu11g1309 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 222 IPR013083 -
Pvu11g1309 264 SUPERFAMILY RING/U-box 157 221 - -
Pvu11g1309 264 SMART ring_2 174 214 IPR001841 -
Pvu11g1309 264 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 3 263 - -
Pvu11g1309 264 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1309 Pvu-Chr11 27401350 27402948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1309 146 262 C3H Transcription Factor Family AT3G58720 49.587 3.53e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1309 - - vun:114168869 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1309 11 27401350 27402948 Pvu11g1309 11 27401350 27402948 ECH