Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1303 ATGATCACCACCACGCTCAGCCGTTCACCCGGTTTCACAATTGCGGTTGACGCATCCAAGGATCCTCTCGTACCGTTTCTCTGGTCTATCAAGGAAGCCCTAGAAGCTTCGTCGGACGAATCCACCTCGAACCTCAGTAACTTACTCAGAGATTGTATCAGAAACTTCAAGAACAATGACCGGTATCGGAACGACGTCAGATTCCTCAAGATCTGGCTCATCTATATGGGAGTTACTGATGATTTTGTCAGTGTTTTCAAAGAAATGCTGGACAGTAATGTATGTGCCAAGAATTCTTCACTTTATGTGTGGTCTGCAAGTTTATTTGAATTGAAGGGAAGATTGCGTTATGCTCTCTTCATCTACCAGCTTGGGATTCGCAGGAATGCGAAGCCAATTGAGTGGTTGAGGAAGGCGCTGACCTTATTTCTCAATAGGATGTCTGAAATACAGAATGCTGCTTCAAACCAGAAGGTTGATGATCTAGAATTCATGAAATTGGAAAATAGTGGCATTAATCCTTGGGACACTTCCGCCATGGATAACCTCTTAAAGACTATACATCCTTTAATTATAAAATTTGATGGGTATCGTTCAAAGGCTAAACCATACTCAGGAAAAGTGGTCTTATCTGCGTTGAAGAATTCATCAAGGAATAAAGTTATTGAGATAGGTGGAATGAAGTACCTTATAAAGGGATGCGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCTAATGTCAACAGTGATCCTGACAATGTTGTTGCTCTAAAGATACAAAAACCAGCTTTCCCGTGGGAATTTTACATTTACCGTCAGCTTGATCTGCGCATCTTAGACAGAGAGAGGTCAAGTTATGGTTTCGCTCACGGAATTCATCTGTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACACTACAGGATGCGGTAAACTCATATGTGGTCTTAGGAAAATCCATGGAAGAAGTGTTATGCATTTATTATACAATTGAAATGTTACACATGGTTGAAACTTTGCACGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTAATTCGATATGCTAGGGGTAAGGGTGACCTTACAGAAGATGGGTTCTTGAACCGAAGTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCATCTCTTTCCAGATCACACGCTATTTAAGGGTGATTGCAGAACTTCTGGTTTTCGCTGCTTTGAGATGCTAGCGGATAAGCCGTGGAAATTTCAGGTAGATGCATATGGCCTTTGTGCTATTGTTCATGTGATGTTGCATGGTTCCTATATGGAAGTCGTCAAAAAAGAACAATCTGATGGGGGCTACCTGTATCTTCCCAGACGACCCTTTAAACGTTACTGGAACATTGAGCTATGGAAGAGTTTCTTCACTAAGATGCTAAACGAATACCCCCATCATGATGATAGGAGTTTGCTGCAGGACTTGAAGAAGTCCTTCCAAGACTATATGGGCTCCAATCCCCATCTTATAAAGAAACTAATGGAGTTACTCTCAAAGCAAAGGGCTTCCATGTGTTCTGCTTAA 1605 0.4212 MITTTLSRSPGFTIAVDASKDPLVPFLWSIKEALEASSDESTSNLSNLLRDCIRNFKNNDRYRNDVRFLKIWLIYMGVTDDFVSVFKEMLDSNVCAKNSSLYVWSASLFELKGRLRYALFIYQLGIRRNAKPIEWLRKALTLFLNRMSEIQNAASNQKVDDLEFMKLENSGINPWDTSAMDNLLKTIHPLIIKFDGYRSKAKPYSGKVVLSALKNSSRNKVIEIGGMKYLIKGCAGQGGFAQVYKANVNSDPDNVVALKIQKPAFPWEFYIYRQLDLRILDRERSSYGFAHGIHLYSDCSILICDYLANGTLQDAVNSYVVLGKSMEEVLCIYYTIEMLHMVETLHGVGLIHGDFKPDNLLIRYARGKGDLTEDGFLNRSGPWCDQGLCLVDWGRGIDLHLFPDHTLFKGDCRTSGFRCFEMLADKPWKFQVDAYGLCAIVHVMLHGSYMEVVKKEQSDGGYLYLPRRPFKRYWNIELWKSFFTKMLNEYPHHDDRSLLQDLKKSFQDYMGSNPHLIKKLMELLSKQRASMCSA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1303 534 Pfam Mad3/BUB1 homology region 1 17 126 IPR013212 -
Pvu11g1303 534 Pfam Protein kinase domain 236 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1303 534 Gene3D - 13 165 - -
Pvu11g1303 534 PANTHER BUB1 KINASE, ISOFORM A-RELATED 156 533 - -
Pvu11g1303 534 PANTHER BUB1 KINASE, ISOFORM A-RELATED 16 158 - -
Pvu11g1303 534 SUPERFAMILY Protein kinase-like (PK-like) 228 515 IPR011009 -
Pvu11g1303 534 ProSiteProfiles BUB1 N-terminal domain profile. 10 167 IPR013212 -
Pvu11g1303 534 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 156 533 IPR015661 GO:0007094
Pvu11g1303 534 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 16 158 IPR015661 GO:0007094
Pvu11g1303 534 SMART mad3_bub1_i 5 126 IPR013212 -
Pvu11g1303 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Pvu11g1303 534 SMART serkin_6 229 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1303 534 Gene3D Transferase(Phosphotransferase) domain 1 227 531 - -
Pvu11g1303 534 ProSiteProfiles Protein kinase domain profile. 229 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1303 Pvu-Chr11 26891408 26899001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1303 223 362 MAP Kinase Kinase Kinase Kinase AT3G15220 29.787 9.09e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Pvu11g1303 Pkinase 5.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1303 K02178 - gmx:100783171 925.62