Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1301 ATGCCCGCTCAGAAACGTTCTTTCCCCGATTCTCCTCACGATCACCACCGTCACACCAAACACCACCACCAAGAAAAAATCGAAGAAGAAGAAGCACAACAACAAGAAGAGGATAATTACGAATCAAACGGTTCAGATTCTCACCGTCCTCCGTCCTCTCCCTCCGAAGACAATTCTGAATTTGTATTTTTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACACGAACAGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCGATGAGACTAGGGAACAATGAATGTCCTGCTTGTCGGACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCGAACTACGATGCTCTAATTGCAGCTTTATATCCTGACATCGAGAAGTACGAGGAAGAGGAGCTTGAGTTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGAGACACCTAGTTCATTTGTAACAAGATCACAGCGGAATCAACGCAATGTTCTTTCTAGGAGACAAAACCAAGTAATTGATAATCAAGGATCTGAAGATAATGAGGATGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAAATTAGGCACAGAAGGCGAAAGAGGCGGATCAGAGGTCGTCCTTCTCAGCCATCGTCATCCACAGCAAGTCCTGATGGTGGATGCATGGAAAGTGATGTGGATATAAGAGAGAATCGAGGAATTTCTTCTAGACCGTTGTCAAAACATCAAAAGCTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAGTGGCAATGGTATCAATAGCAAAACTGCCCGCAGTAGCCGCTTGGCTAAGTTAGTTGATTATCTCCGTAACTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTCTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGACCAATTTTGTCTGTGAAGCACCTTTGTGAGTATGTTGCTCGCCAGACATCTTTGCCAATTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCTACAGTACAGTTTGTGACAAGTCATTTGATGAGATTTCATCCTTTGATGAGCTAACAACGCTGATTATAGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGCATGAATCTTTGGCAGAACTTAAATCCAAATGCATATCTCAGAGGGCGCATTTGATTCTGGCATACAGGCGGAAGGAGTGA 1362 0.4339 MPAQKRSFPDSPHDHHRHTKHHHQEKIEEEEAQQQEEDNYESNGSDSHRPPSSPSEDNSEFVFLELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRETPSSFVTRSQRNQRNVLSRRQNQVIDNQGSEDNEDENDNNEKDSSSTDERCTEIRHRRRKRRIRGRPSQPSSSTASPDGGCMESDVDIRENRGISSRPLSKHQKLTWGRGGFRSHTRHGSGSGNGINSKTARSSRLAKLVDYLRNLNENTDELDVHLILLSLDKQSTPSLQQPHLCCRPILSVKHLCEYVARQTSLPIEEVEILAVKGCYSTVCDKSFDEISSFDELTTLIIDPSKDELETLQGHESLAELKSKCISQRAHLILAYRRKE* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1301 453 MobiDBLite consensus disorder prediction 188 211 - -
Pvu11g1301 453 SUPERFAMILY RING/U-box 64 146 - -
Pvu11g1301 453 Pfam Zinc finger, C3HC4 type (RING finger) 74 114 - -
Pvu11g1301 453 MobiDBLite consensus disorder prediction 1 57 - -
Pvu11g1301 453 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 14 453 - -
Pvu11g1301 453 ProSiteProfiles Zinc finger RING-type profile. 75 115 IPR001841 -
Pvu11g1301 453 MobiDBLite consensus disorder prediction 266 280 - -
Pvu11g1301 453 ProSitePatterns Zinc finger RING-type signature. 91 100 IPR017907 -
Pvu11g1301 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 144 IPR013083 -
Pvu11g1301 453 PANTHER OS11G0578200 PROTEIN 14 453 IPR044592 -
Pvu11g1301 453 CDD RING-HC_RING1_like 75 115 - -
Pvu11g1301 453 Coils Coil 23 43 - -
Pvu11g1301 453 Coils Coil 144 164 - -
Pvu11g1301 453 MobiDBLite consensus disorder prediction 177 313 - -
Pvu11g1301 453 SMART ring_2 75 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1301 Pvu-Chr11 26869706 26876023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1301 68 138 C3H Transcription Factor Family AT3G23060 35.135 6.82e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1301 K10695 - gmx:100819311 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1301 11 26869706 26876023 Pvu11g1301 11 26869706 26876023 ECH