Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1293 ATGAGCACCATTTGTTCAGAACACAAGTTCCAACTTCAACCCTCTCACCAACTTCTCTCCCTCAAGAAATCCCTAAGGGAAATTGACATCCCGCCAAGGAAGCTCCTCATGCGCCGCGCCGCCGCCGACATGTTTTCCGACGACACCCTCCTCCACAAATACCTCCCCAACACCAAATCCATGGACTCCGACGACTCTGATGATGTCGGAGACCCTTATGCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGGTGCACTCGCAGCCGGAGCCATGACTGGACAGACTGTCCTTTTGCACACCCCGGCGAGAAGGCTCGCCGCCGTGACCCTCGTCGGTTTCATTACTCTGGGACGGTGTGTCCAGAGTATCGGCGCGGGCAGTGTAGCAGCGGCGATGCGTGTGAGTTCTCTCATGGGGTGTTTGAGTGCTGGTTGCACCCTTCTAGGTATAGAACTGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTCAGGGTTTTGCCTCCCCAAGACAGTATCAAGAAGAAAAAGTGCACCAATATGAGTCCTCATAATCATAATCATAATAATAATAATAGTAACCATTGCTGTTTGTTTTGTCATTGCTCATCTACTTGTTCACCAACTTCTACCCTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCTTCTTCCTCTTCCTCTTCCCCTTCTAGGTTTGAGCCTAGCCACCGTCATGGTGTTGTGAGCTACAAGGATGTGTTCTCCGAGCTTATGTGCTCCATGGAGGGTTTGAATTTTGGCGAGACTTCATATGTGTCTGCTTCAAAGCCTCACAGTCTGTCTTGGCTTGATGTCTCTGAGGATAACAAACAGTTCAATATTCATTCACCAACCATAGCTACTTGTGGAAGCTTTTCCAATAATGAGAATAGAAGATTTTTGAGGGAAGGAAGTAGAAGCTTTTCCATTAATGGGAATGGAAGGTTTTCGAGGGAAGAAAGTGGGGTTGTTGATGATGTCATAGCCCCAGATCTGGCGTGGGTTAATGACTTGCTGATGTAG 1089 0.4839 MSTICSEHKFQLQPSHQLLSLKKSLREIDIPPRKLLMRRAAADMFSDDTLLHKYLPNTKSMDSDDSDDVGDPYASDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDSIKKKKCTNMSPHNHNHNNNNSNHCCLFCHCSSTCSPTSTLFGMSHFSPPLSPSSSSSSPSRFEPSHRHGVVSYKDVFSELMCSMEGLNFGETSYVSASKPHSLSWLDVSEDNKQFNIHSPTIATCGSFSNNENRRFLREGSRSFSINGNGRFSREESGVVDDVIAPDLAWVNDLLM* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1293 362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 27 361 - -
Pvu11g1293 362 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Pvu11g1293 362 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Pvu11g1293 362 Gene3D - 117 181 - -
Pvu11g1293 362 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Pvu11g1293 362 PANTHER UNKEMPT FAMILY MEMBER 27 361 IPR045234 -
Pvu11g1293 362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1293 Pvu-Chr11 26760193 26761922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1293 73 183 C2H2 Transcription Factor Family AT5G12850 64.865 2.87e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu11g1293 zf-CCCH 9.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1293 K23047 - pvu:PHAVU_011G125300g 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1293 11 26760193 26761922 Pvu11g1293 11 26760193 26761922 ECH