Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1282 ATGCTTGCCGTGGCACCTTTGAGGAGCATCAAAGATGAAAAGAACCAAGGAGAGATGGAGGGTTTCTCGATGGCCACAGCAACAACACCAGATGATTTTGACTTTGTTGACCTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTCGACGACCTCTTCGTCGGCATCGACGTTGATGGAGATGTCTTGCCGGACTTGGAGATGTTTGGTGAGTTTTCCGTCAGCGCCGGTGAAGAGTCATCGGAGATGAACTCATCAGCAGATAACAGCAAGGAGGAAAATGATAAAAATTGTGTTATCACTGCTTCAAAGACGGAAGAGGAAGATAAAAGTTCTTGTGCTGCTTCGCCTCAAGACTCGGGGTCAAACCCAGGAGAGGAGATAGTGAGCAATAAGAATGGTGAATCCGTGGTGGTGAATCCGGCTCCAAAGGAAGGTGGAAAAGGAAAAAAATCTTCATCGGCTCAACTGAAGAATAATAGTAATAGTAATAATCCTCAAGGGAAGAGAAAACTGAAGGTGGATTGGACCCCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGACAAGGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATAGTCTCACTCGTCATAACATTGCTAGCCACCTTCAAAAATATAGATCTCATAGGAAACACTTGCTGGCTCGTGAGGCTGAAGCAGCAAGTTGGAGTCAAAGAAGGCACATATACGGTGTTGGTGGAAGTGGAGGGAAGAGAGGGGGGAGTCCATGGCTAGCACCCACCATGGGATTCCCTCCTCCAATGACCACAATGCACCATTTTAGACCTCTGCACGTATGGGGACACCCCTCCACGGACCACTCCTTCATGCACATGTGGCCTAAACATCTTCCACCTTCACAACCACTCTCATGGCCATCACCTGCACCACCCCAAGACCCTTCTTTTTGGCACCAACGGGCTCCAAGTGCACTAATACCAGGAACAGCTTGTTTCCCACAACCTCTGACACCAACGGGTTTTGGAACTCACCTTGTCCCTGGCATCCCACCTCATGCCATGTACAAAGCAGATCAAACCATTGGCATCCAGGGTCCCCGTCCCCTACTAGATTTTCATCCGTCAAAAGAATGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCATGGCTGCCCTTACCTCTTGGACTGAAGGCTCCAGCAATTGATAGTGTGATGAGTGAATTACAGAGACAAGGGATTCCAAACATTCCACCAACTAGTGCTTGA 1281 0.4785 MLAVAPLRSIKDEKNQGEMEGFSMATATTPDDFDFVDLSEGNLLESINFDDLFVGIDVDGDVLPDLEMFGEFSVSAGEESSEMNSSADNSKEENDKNCVITASKTEEEDKSSCAASPQDSGSNPGEEIVSNKNGESVVVNPAPKEGGKGKKSSSAQLKNNSNSNNPQGKRKLKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRHIYGVGGSGGKRGGSPWLAPTMGFPPPMTTMHHFRPLHVWGHPSTDHSFMHMWPKHLPPSQPLSWPSPAPPQDPSFWHQRAPSALIPGTACFPQPLTPTGFGTHLVPGIPPHAMYKADQTIGIQGPRPLLDFHPSKECIDAAIGDVLSKPWLPLPLGLKAPAIDSVMSELQRQGIPNIPPTSA* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1282 426 MobiDBLite consensus disorder prediction 74 175 - -
Pvu11g1282 426 Pfam Myb-like DNA-binding domain 174 223 IPR001005 -
Pvu11g1282 426 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 426 - -
Pvu11g1282 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 227 IPR017930 -
Pvu11g1282 426 SUPERFAMILY Homeodomain-like 170 228 IPR009057 -
Pvu11g1282 426 Gene3D - 168 229 - -
Pvu11g1282 426 MobiDBLite consensus disorder prediction 85 113 - -
Pvu11g1282 426 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 171 225 IPR006447 GO:0003677
Pvu11g1282 426 MobiDBLite consensus disorder prediction 114 137 - -
Pvu11g1282 426 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 426 IPR044825 GO:0003700|GO:0045893
Pvu11g1282 426 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1282 Pvu-Chr11 26377070 26382146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1282 1 377 G2-like Transcription Factor Family AT5G44190 39.655 5.65e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu11g1282 Myb_DNA-binding 4.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1282 - - vun:114168187 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1282 11 26377070 26382146 Pvu5g1046 5 30345696 30349610 PCT