Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1275 ATGGGTGTGGATTACTACAAGATCTTGCAGGTTGATAAGAACGCCAAAGACGATGACTTGAAGAAGGCTTATAGGAAACTTGCTATGAAATGGCACCCTGACAAAAACCCCAACAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAGATTTCCGAAGCATACGAGGTGCTTAGCGATCCTCAAAAGAAAGCTATTTATGATCAATATGGAGAAGAGGGTTTGAAAGGTCAGGTTCCTCCTCCTGATGCTGGTGGTGCTGGAACTACTTACTTTTCCACAGGAGATATCCCGGGATCGTTTCGGTTCAATCCCAGGAATGCCGATGACATTTTTGCAGAGTTTTTTGGTTTCTCAAGCCCATTTGGTGGAATGGGTGGGAGAGGGGGTGGCGGAGGTGGCGGCGGCGGCATGAGATCAAGGTTCCCTGGTGGGATGTTCGGTGATGATATGTTTGCATCTTTTGGGGATGGAGGGGTTCATATGAGTCAAGGTGCACCTCGGAAAGCTCCTCCTATTGAGAACAAGTTGCCTTGTACTCTTGAGGAGATATATAGAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCTGATGCCAGTGGCAAAACCATGCAAGTGGAAGAGATTTTGACCATTAATGTGAAGCCTGGTTGGAAGAAGGGAACCAAGATCACCTTCCCTGAAAAGGGAAATGAACAGCCAAATGTGACGCCGGCCGATCTCGTTTTCATCATCGACGAAAAGCCACACGGTGTCTTTACTCGCGACGGAAACGACCTTGTAGTCACGCAGAAGATTTCCCTTGCAGAGGCCTTAACTGGTTATACAGTGCACGTCACCACCCTGGATGGTAGAAACTTAACCATACCAATCAGCAATGTTATTCATCCCAGTTATGAAGAGGTTGTCCCAAGAGAAGGCATGCCACTTCCAAAAGATCCATCAAAGAAGGGAAACTTGAGGATAAAGTTTAACATCAAGTTTCCAACTAGGCTTACTGATGAGCAAAGAGCAGGAATCAAGAAACTCTTGGCTGCCTAA 1044 0.4569 MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPDAGGAGTTYFSTGDIPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRGGGGGGGGGMRSRFPGGMFGDDMFASFGDGGVHMSQGAPRKAPPIENKLPCTLEEIYRGTTKKMKISREIADASGKTMQVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHGVFTRDGNDLVVTQKISLAEALTGYTVHVTTLDGRNLTIPISNVIHPSYEEVVPREGMPLPKDPSKKGNLRIKFNIKFPTRLTDEQRAGIKKLLAA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1275 347 CDD DnaJ_C 170 333 - -
Pvu11g1275 347 Gene3D - 251 331 - -
Pvu11g1275 347 Pfam DnaJ C terminal domain 172 330 IPR002939 -
Pvu11g1275 347 CDD DnaJ 4 59 IPR001623 -
Pvu11g1275 347 SUPERFAMILY Chaperone J-domain 3 129 IPR036869 -
Pvu11g1275 347 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Pvu11g1275 347 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Pvu11g1275 347 Gene3D DnaJ domain 3 126 IPR036869 -
Pvu11g1275 347 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 346 - -
Pvu11g1275 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 339 IPR008971 GO:0006457|GO:0051082
Pvu11g1275 347 Pfam DnaJ domain 4 67 IPR001623 -
Pvu11g1275 347 PRINTS DnaJ domain signature 6 24 IPR001623 -
Pvu11g1275 347 PRINTS DnaJ domain signature 24 39 IPR001623 -
Pvu11g1275 347 PRINTS DnaJ domain signature 42 62 IPR001623 -
Pvu11g1275 347 PRINTS DnaJ domain signature 62 81 IPR001623 -
Pvu11g1275 347 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 346 - -
Pvu11g1275 347 Gene3D - 171 249 - -
Pvu11g1275 347 SMART dnaj_3 3 62 IPR001623 -
Pvu11g1275 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 171 251 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1275 Pvu-Chr11 25987727 25990999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1275 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 5.90e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1275 K09510 - gmx:100778672 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1275 11 25987727 25990999 Pvu11g1275 11 25987727 25990999 ECH