Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1271 ATGCTGAGAAAGATGGATGAAGGAGAAATCATCACAAATGCTTTTCCTCAGAACCTAACTGCTTCTGCTGCATCAAATAGTAGCAATCCTCCTCCTGCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTTGTAGCCTTATCACCAAAGACACTCATGGCTACCAACAGATTCCTGTGTGAAACTTGTGGGAAAGGTTTCCAGAGGGATCAAAATCTTCAACTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAAAGTTGTGTCCACCACGACCCTTCAAGGGCTCTTGGGGATTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCGGTGCAGTCGGATTGGAAAGCACACTCCAAGACCTGTGGTACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCAAGGGTAAATGCATCGTCTGACATTAACGCTTCTTTAGGGCGTAACATTGGTTACAACGTAATTGGAACTTCCCTAGGCCCTAACATGGCTACCCATTTTTCTTCAATTTTCAAGCCAGTTTCAAGCACAGAAGAAACAAGCAATCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCTCCTCAGGCTCAAGAAACAATGGTCAACAACAATTTGAGTGAGATTCATCAACTTGGGTCTGTCACAAGCTCAGAAACAGCATATGGTGGCAACTCACTAGTCCAATGCTCAAATTTTCCACCTTCAAACTATCAACTAAGTTGGGTGTTTGGAACTAAACTTTCCAATGACAGTAACATCCAAAAGCTAACAACCAGCACAACTACATCACTTCCCCTAGTCAACTCGAGTGTTCCTTCTTTGTATAGTTCCCAACACCAACCCCGTCAAACATGTTCAACAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATCGGATCAAGCTCAAGTGACCCTTCATGGCTTGAGAGCATAGGTTTGAAATGTGGTAGCAGTACCCAAGGTCAAGATGGGAATATCAGTAACAAGTTTAGTGGCATGTATGGTTCAAGTTTAGTTCTCAGCACTCTTGGGACTGAACCAGATAACTCTGCATCTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTACTCAATGAAGAAAATGGAGGGGGGCAATTTAGGGATTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCGCACTTCATCAATCAAAGGGTGGATTTGATTTGA 1404 0.4444 MLRKMDEGEIITNAFPQNLTASAASNSSNPPPALKRKRNLPGNPDPEAEVVALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASSDINASLGRNIGYNVIGTSLGPNMATHFSSIFKPVSSTEETSNQTSRGLPLWMGQTSPQAQETMVNNNLSEIHQLGSVTSSETAYGGNSLVQCSNFPPSNYQLSWVFGTKLSNDSNIQKLTTSTTTSLPLVNSSVPSLYSSQHQPRQTCSTANMSATALLQKAAQIGSSSSDPSWLESIGLKCGSSTQGQDGNISNKFSGMYGSSLVLSTLGTEPDNSASDLSQMHPPKRRHVLNEENGGGQFRDFLGVGVQNHLPHFINQRVDLI* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1271 467 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Pvu11g1271 467 Gene3D Classic Zinc Finger 60 87 - -
Pvu11g1271 467 MobiDBLite consensus disorder prediction 16 33 - -
Pvu11g1271 467 Gene3D Classic Zinc Finger 97 188 - -
Pvu11g1271 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Pvu11g1271 467 PANTHER F-BOX ASSOCIATED PROTEIN 29 466 - -
Pvu11g1271 467 MobiDBLite consensus disorder prediction 16 46 - -
Pvu11g1271 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 466 - -
Pvu11g1271 467 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1271 Pvu-Chr11 25324661 25327977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1271 31 453 IDZ Gene Family AT1G03840 49.692 8.50e-135 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g1271 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1271 K25870 - gmx:100790620 774.237