Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1238 ATGGTACCCTGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCTACGAACAATGAGATACATAAAATCATGATTAAGAGCCCAAAAGAAGCGGATTTTCCTTTAAAACAGGAGGGTAGTCATTCTCAAACAATTAGTGATCCTGAAAAGGCAAAGGCTTCATCAAGCTCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGAAGAGTGAGATTATCAGTACCAACTGCAATCCAACTCTATGATCTTCAAGATAGGTTAGGGCTCAGTCAACCTAGCAAGGTTGTTGACTGGTTGCTCAATGCAGCTAAGCATGAAATTGACGAACTTCCACCACTGCCAATTGTTCCTTCAGTGAATAACTTCACCCTTGGTTATCCATCTGCTGTTACTTCTAATGAAGCTACAACCCCTCACTCTCAGCCTAGTTCAGACCAAAATTCTGCATGGAAATTAAAGCGTAAAGAAATTTCAGGAGAAATTATCAGCATTGACAAAGCAAATTGGATAAATAGAAGTGAAGAGGATAAGCAAGGAAGCAATAGTGAAGGTCCTAGCACACATGTTATGCCAAATAATCTCTTACCAAGGGTAAACCATCCTTCATTCCTGGGCCTGCTAAATACCATGCCACATGGTTACCAGTGGGAACCTTCTGCTGGTGATGTTTCTCATCAGTTGGCAAACAATGGATTTTCAAACCAAACAGACATACACAGCATTAGCGTTGTACCTTTCCCGACATCAACGCTGTCTTTATCATCAGGGAATTCTCAAATTCTGTTATGTCCTCCAGGAGCAGCACAGTCATATTTCCCTTCACATTTCACAGAAATGGACATGGATCAGAGGCAAATCAACCACTATCAGATGTTGAGTTCAGGTCCTCAAAACCCATCATCGAATTCTCTCAATCATTCTTTTAGCTTGGCTATGATGTCTCATAAACCTCTCCATTCACCCAACTGCAGCAAAAGCCCCTCCCACAAAGACCAAGATTTCCCTTCCAAGTGA 1110 0.4189 MVPWNRILTSIKWKDKTLHLATNNEIHKIMIKSPKEADFPLKQEGSHSQTISDPEKAKASSSSAAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIVPSVNNFTLGYPSAVTSNEATTPHSQPSSDQNSAWKLKRKEISGEIISIDKANWINRSEEDKQGSNSEGPSTHVMPNNLLPRVNHPSFLGLLNTMPHGYQWEPSAGDVSHQLANNGFSNQTDIHSISVVPFPTSTLSLSSGNSQILLCPPGAAQSYFPSHFTEMDMDQRQINHYQMLSSGPQNPSSNSLNHSFSLAMMSHKPLHSPNCSKSPSHKDQDFPSK* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1238 369 MobiDBLite consensus disorder prediction 43 67 - -
Pvu11g1238 369 MobiDBLite consensus disorder prediction 347 369 - -
Pvu11g1238 369 MobiDBLite consensus disorder prediction 40 68 - -
Pvu11g1238 369 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
Pvu11g1238 369 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 30 364 - -
Pvu11g1238 369 MobiDBLite consensus disorder prediction 162 182 - -
Pvu11g1238 369 Pfam TCP family transcription factor 84 179 IPR017887 -
Pvu11g1238 369 MobiDBLite consensus disorder prediction 162 180 - -
Pvu11g1238 369 MobiDBLite consensus disorder prediction 201 226 - -
Pvu11g1238 369 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 364 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1238 Pvu-Chr11 21111593 21112744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1238 67 323 TCP Transcription Factor Family AT3G02150 44.118 2.88e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu11g1238 TCP 4.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1238 - - var:108327895 671.389