Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1235 ATGTCACTGGAGGCTCTGAAGGAAACTCTGCGACCTTGTTCAACCCAAGAGCCTTCTTCCTCTTCTGCAATTACCCAAACACAGCGCAATTCAATTCTTAGCCACTACGATTCCCTCTTCCCAATCCACAGAAAACCCCCAAAATCCTCTCTTTCCGACCAGCTTCGCCGCCTTAACGACTCACTATCTCCATCACACTCCAAAACCCTACAGCAAGAAAAAGAAAAGGAGGAACTACTACAAGAAGAAGAACCTGAGATAGAGAGAGCGAAATTCGCTTCAGTTAAATTGCCACAATTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCTGTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTTCTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGCTTGTACAAGAACCATCATGGAGGCATGCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAGCAATAGCATTTCTCGCTGCTGTCTTTGGTAAAGGACAGTCTACTCTAAATGAAAACCAGATACAGAAAAGAGACCCTGCATTAATAATATGCCCAACATCAGTTATCCACAACTGGGATAGCGAATTCTCTAAGTGGTCTAACTTCAATATTTCCATCTATCATGGTGCAAATCGGGATCTGATATTTGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCTTTGTCAGATGTCAAATGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTGTAATGCAAAATAAGATAATGGAACTGTTCAATCTCTTTGACTGGGTTTCACCAGGATCCCTTGGAACACGGGAACACTTTCGTGACTTCTATGATGAACCCCTCAAGCATGGGCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTCGTAAATATATGTTGAGAAGGACAAAAGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAATATTGTGTTCTGTGCAATGAGTGATCTGCAAAAACGTATTTACAAGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGACGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAACTTATCAAACCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCACTGATATTGATTTAGTGGGTGGGAAAACACAAAATGAAAGTTTCATGGGTTTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAGAAGCTATTGTTCTCATGGAATTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATTCGAAAAGGCTACAGCTTCTCAAGACTTGATGGGTCCACTCCTACTAATTTACGCCAATCTCTGGTTGATGATTTCAACTCTAGTCCAAGCAAACAGGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTTAGTGCAAACCGTGTTGTAATATTTGACCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCACGTCAGGTGTATAAGCAGCAGCTATCGAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAAGCTGTTTACCAGTGAGATCGTTGAATTGCATAAAGAACATGGACATGAAACGGGACAACTGGAAAAAGTAAATCTGTCAGAACAAACAGATTCATCGGTATCAGAGTCAGAAACCAGATCATCTTATAAATCGGCAGGGACTGCAACAAGTAAACCAGATCTTGAAGACCTTGGCATTGTATATACTCATCGCAATGAAGACATTGTCAACTTTGGAGCAGTAATTCAAGGGAAAATAAATGCCAACATCCCATCAAATGATAGCTTAGTCAAGCCAGGCATTTCTTCGGATCATCAAAGAAAAAAACCAGAAAAAAGTAAAGTTCCTTTGATTGATGATAGGAAGAGAACCCAATATAAGCTCCTTGCTCAGTCTATGGGCATGGAAGAGTTTGCTTTTAGCAAATGGTTACTATCAGCGACTCCACTGGAGAGAGAAAAAGTGCTTCTTGACTACAAGAAGAAAAAGAAGATGCCTAATGGTTGA 2592 0.4132 MSLEALKETLRPCSTQEPSSSSAITQTQRNSILSHYDSLFPIHRKPPKSSLSDQLRRLNDSLSPSHSKTLQQEKEKEELLQEEEPEIERAKFASVKLPQFQFDHTGPFEPLLLSSHGEFPVVQVPASINCRLLEHQREGVRFLYGLYKNHHGGMLGDDMGLGKTIQAIAFLAAVFGKGQSTLNENQIQKRDPALIICPTSVIHNWDSEFSKWSNFNISIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSSLSDVKWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLFDWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLRKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYKRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGTDIDLVGGKTQNESFMGLSDVKHCGKMRALEKLLFSWNSQGDKVLLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIVELHKEHGHETGQLEKVNLSEQTDSSVSESETRSSYKSAGTATSKPDLEDLGIVYTHRNEDIVNFGAVIQGKINANIPSNDSLVKPGISSDHQRKKPEKSKVPLIDDRKRTQYKLLAQSMGMEEFAFSKWLLSATPLEREKVLLDYKKKKKMPNG* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1235 863 MobiDBLite consensus disorder prediction 52 68 - -
Pvu11g1235 863 Pfam Helicase conserved C-terminal domain 520 632 IPR001650 -
Pvu11g1235 863 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 523 676 IPR001650 -
Pvu11g1235 863 Gene3D - 112 363 IPR038718 -
Pvu11g1235 863 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 314 IPR014001 -
Pvu11g1235 863 PANTHER SNF2/RAD54 FAMILY MEMBER 59 850 - -
Pvu11g1235 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 364 IPR027417 -
Pvu11g1235 863 MobiDBLite consensus disorder prediction 69 84 - -
Pvu11g1235 863 SMART helicmild6 549 632 IPR001650 -
Pvu11g1235 863 MobiDBLite consensus disorder prediction 723 750 - -
Pvu11g1235 863 MobiDBLite consensus disorder prediction 43 84 - -
Pvu11g1235 863 MobiDBLite consensus disorder prediction 12 29 - -
Pvu11g1235 863 Coils Coil 70 90 - -
Pvu11g1235 863 MobiDBLite consensus disorder prediction 715 751 - -
Pvu11g1235 863 Gene3D - 376 741 IPR027417 -
Pvu11g1235 863 SMART ultradead3 128 322 IPR014001 -
Pvu11g1235 863 CDD SF2_C_SNF 514 643 - -
Pvu11g1235 863 Pfam SNF2-related domain 148 404 IPR000330 GO:0005524|GO:0140658
Pvu11g1235 863 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 59 850 - -
Pvu11g1235 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 686 IPR027417 -
Pvu11g1235 863 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1235 Pvu-Chr11 21044290 21051081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1235 152 662 RAD5 or RAD16-like Gene Family AT1G02670 26.391 1.91e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu11g1235 SNF2_N 6.2e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1235 K20098 - gmx:100781003 1494.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1235 11 21044290 21051081 Pvu11g1235 11 21044290 21051081 ECH