Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1230 ATGGATCGGCTAGGAATTCAGCCCTCTTCAACCAAGGTTGAAAGAAGGCTCGTTGAAAAAAACAGAAGAAACCAGATGAAGATCCTCTTCAACAAACTCAATTCTCTTCTCCCTAGCTACAACCCCAAGGAAGTATTGCCACTGCCAGACCAAGTGGATGAGGCAATCAACTACATCAAGAGTTTGGAGGCGAAGGTGAAGATGGCACAGGAGAAGAAAGAGAGTTTGCAGGGTATTAAGAAAAGATCCCACGGTTGCTTCTCCAGTAGCAGAGCTACTTTTGCTGCAACACGTCTCCCAAAATCTCCACAACTTGAGATTCAAGAAGTGGGTTCCTCCCTACAAGTTGTTCTGATTACTGGGATAGACCACCAGTTCATTTTCTGTGAAATTATTCGAATGCTGCATGAAGAGAACATAGAGGTTAGAAGTGCCAATTCCTCACTCACTGGAGACTCGGTGCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTTTCTGCAATTAGGAGCCGCCAAAGTAAGTGAGAGGTTGAAAAGGTTTGTAAATGGATCCAACAGTGACGTTGAAACACAAGACGAGTGGTGGGATTTTGATAATTGTAGTGATGATATGTGGGGTTTCTAG 627 0.4386 MDRLGIQPSSTKVERRLVEKNRRNQMKILFNKLNSLLPSYNPKEVLPLPDQVDEAINYIKSLEAKVKMAQEKKESLQGIKKRSHGCFSSSRATFAATRLPKSPQLEIQEVGSSLQVVLITGIDHQFIFCEIIRMLHEENIEVRSANSSLTGDSVLHVVHAEIPQSFLQLGAAKVSERLKRFVNGSNSDVETQDEWWDFDNCSDDMWGF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1230 208 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 189 IPR015660 GO:0003700|GO:0006357
Pvu11g1230 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Pvu11g1230 208 Gene3D - 6 86 IPR036638 GO:0046983
Pvu11g1230 208 Coils Coil 52 79 - -
Pvu11g1230 208 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 189 - -
Pvu11g1230 208 Pfam Helix-loop-helix DNA-binding domain 13 63 IPR011598 GO:0046983
Pvu11g1230 208 SMART finulus 16 68 IPR011598 GO:0046983
Pvu11g1230 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 77 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1230 Pvu-Chr11 19828256 19829407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1230 10 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.111 1.45e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g1230 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1230 - - vun:114170573 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1230 11 19828256 19829407 Pvu11g1230 11 19828256 19829407 ECH
Pvu5g1067 5 30785563 30786451 Pvu11g1230 11 19828256 19829407 PCT