Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1226 ATGGGTTGCTTATGTTCTAAGAGTTCAGCTGTAGAGGACAGCAAGGTAGGTGTTACTAAGAAATTGCAATCGTATAGCACAAGGCCTTCAGAGTTGAACGTTTTGCGGTTAAATTCAACTAGGAGGGTTGATGAAGGTGGGGCTAAAGATGTGATAATAGAAGGTGGTCATGTAAAAGGTTCATTGATTGACAAGAAGGCCAATGGTTCAGGGCAGTTGTATGTTGATCATGATGGGAAGAAGAAAATAGAGAAGCCTGAAGTGACTGTTGTGGATCATCTTGGCCCTGGAAGGATTCCAAAGGCTGTAGAAGGAGAGCAAGTTGCAGCTGGATGGCCGGCATGGCTTTCTTCAGTTGCCGGTGAAGCTATTAAGGGATGGATACCTCGGAGAGCGAATAATTTTGAGAAGTTGGACAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCAAGGGATGTGATTAACCGCAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTGAAGTTTATGGCAAGGGAAATCCATGTTTTGCGTAGGCTTGACCATCCAAACATTATAAAATTGGAGGGCTTGGTAACGTCACATATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGACATCAAGTTCTCTGAACCACAGCTAAAATGCTACATGCAGCAGCTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGTGACATAAAAGGCTCAAATCTTCTCATTGACAATAATGGAATCTTAAAAATCGCTGATTTTGGTTTGGCAAGTTTTTTTGACCCCCACCTTAGTGTTCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCAAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGTGAACTATATACTGGAAGGCCCATTTTACCAGGAAAAACAGAGGTTGAGCAATTGCATCGAATTTTTAAACTTTGCGGCTCACCATCTGATGAATATTGGCTTAAATTGCGGCTGTCACATTCAACAGTATTCAGGCCGCCACACCATTATAGGCGATGTGTTGCAGAGACATTTAAGGACTACCCATCTACTGCTCTAAAGCTTATTGAGACCCTGCTTTCTGTAGAGCCGGCACATCGGGGAACTGCAGCAGCTGCTCTGAAGAGTGAGTTCTTTACATCGGAGCCTGTGCCTTGTGATCCATCAAGTTTACCGAAATATGCTCCCAACAAGGAAATTGATGCTAAATTACGAGAAGAAGCCAGAAGGCAAGGAGCTGTTGGAGGTAGGGACCAAAAACATGCCTCGGGAGTTAGACAAGAAAAAGGACATAGGGCCAGTGTCACTACAAAAGACAGTGCTGAACCAGCTTTATCAGTACAGCAAGGACGTTATTCCAGCTCTAAGAACCGAAGTGAATTATACAACCCTCATAGGGGAGCAGTGTCTGGTATTCTGGTTTTCCCTCACAAAACGTCAGAAGATGCTAAAGAAATTGAAAATAATTTTTCTGGGCATATTTATAAGAAGCCATCACATTCAGGCCCATTGGTTCCGGGTTCTGTTTGGGCAAAGGGTGCGAAGGAAGTTGATGATGTACCTCCTGTTTCAATCAGAGGGAACCTATCAAAAATATCTGGGCTAGTGGCATCTAGGACATTGTTGCCAGAAGATCAGGAGGATAAACCAGTTCACTTGCACCACAGAAAACCAAGTGAAGTAAGAAAATCAATGGAGTCAACTAACGGATCAGAGTCAAGAAGAAGGCAGGAACAAAAACGGATTGCTGATCACAATCAAATTGAAAGCAGAAGGATCCCCACCGAAAAATCAACTCCGGGAGGGCGTGAGTCGATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTGTCATCAAGCAACATGGATCAAATGCTCAAAGAGCATGATCGAAAGATACAAGAGTTTTCAAGACGAGCAAGAATTGACAAGTCAAGGGCAAGAGGTGAGAAAGTTCGTGCACAGCGGAAGTGGTGA 2100 0.4343 MGCLCSKSSAVEDSKVGVTKKLQSYSTRPSELNVLRLNSTRRVDEGGAKDVIIEGGHVKGSLIDKKANGSGQLYVDHDGKKKIEKPEVTVVDHLGPGRIPKAVEGEQVAAGWPAWLSSVAGEAIKGWIPRRANNFEKLDKIGQGTYSTVYKARDVINRKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLVTSHMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHLSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDEYWLKLRLSHSTVFRPPHHYRRCVAETFKDYPSTALKLIETLLSVEPAHRGTAAAALKSEFFTSEPVPCDPSSLPKYAPNKEIDAKLREEARRQGAVGGRDQKHASGVRQEKGHRASVTTKDSAEPALSVQQGRYSSSKNRSELYNPHRGAVSGILVFPHKTSEDAKEIENNFSGHIYKKPSHSGPLVPGSVWAKGAKEVDDVPPVSIRGNLSKISGLVASRTLLPEDQEDKPVHLHHRKPSEVRKSMESTNGSESRRRQEQKRIADHNQIESRRIPTEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAQRKW* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1226 699 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1226 699 PANTHER CYCLIN-DEPENDENT KINASE 1 685 - -
Pvu11g1226 699 MobiDBLite consensus disorder prediction 581 647 - -
Pvu11g1226 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Pvu11g1226 699 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Pvu11g1226 699 Gene3D Transferase(Phosphotransferase) domain 1 218 457 - -
Pvu11g1226 699 MobiDBLite consensus disorder prediction 448 503 - -
Pvu11g1226 699 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Pvu11g1226 699 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1226 699 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Pvu11g1226 699 PANTHER CELL DIVISION PROTEIN KINASE 1 685 - -
Pvu11g1226 699 MobiDBLite consensus disorder prediction 448 476 - -
Pvu11g1226 699 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g1226 699 MobiDBLite consensus disorder prediction 479 501 - -
Pvu11g1226 699 CDD STKc_CDK9_like 135 419 - -
Pvu11g1226 699 MobiDBLite consensus disorder prediction 582 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1226 Pvu-Chr11 19589531 19595530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1226 127 460 Core Cell Cycle Gene Families AT5G10270 48.000 4.07e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu11g1226 Pkinase 2.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1226 - - gmx:100807590 1262.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1073 5 30925198 30931078 Pvu11g1226 11 19589531 19595530 PCT