Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1216 ATGGAGTGCAAAAGTGAAGAGCGTGTCTCTAAACTACTTCGAGCCCAAACCCATGTTTGGAATCACATTTTCAGCTTCGTAAATTCCATGTCCCTCAAATGTGCAATTGATTTGGAGATACCTGATATCATACACAAGTATGGTGAAACCATGCCATTCTCACAACTCACTGCTTCACTATCACTCAACCCTTCCAAAGCCAACTGCATCTACCGCTTGATGCGAATCTTGACCCATTCTGGCTTCTTCTCTCAACTCCAGGTCAATGAGAATGATCTTGAAATGGGTTATGTCTTGACTGATGCTTCCACTCTACTACTTAAGGACAACCCCTTAAGTATGCTACCTTTCTTCCATGCCATGCTTGATCCAATTTTGACAAAGCCATGGCATCAATTGCCTACATGGTTCAGAAATGATGATCCTACGCCATTCCACACTGCACATGAGATGAAAATTTGGGATTATGCTGGCCGAGATCCAAAACTTAATCAACTTTTCAACGATGCCATGGCAAGTGACGCTCAATTGGTTTCCAATGTGGTGATTGAGAGGTGCAGCGGAGTGTTCAAGGGCTTGGAGTCACTTGTTGATGTTGGGGGAGGCACTGGTATCATGGCAAAGGCAATTGCCAAATCATTCCCTCACATAGATTGTACTGTATTTGATCTCCCACATGTTGTTGCCAACTTAAAAGGATGTGAGAACTTAAAATATGTTGGAGGTGACATGTTTGAATCAGTTCCTCCTGCAGATGCCGTTCTACTGAAGTGGATATTGCATGACTGGAATGATGAGCAGTGCGTGAAAATACTTAAGAAATGCAAGGAGGGAATAAAGAGGAAGGTGATTGTGATAGACATGGTGGTGGAGAGTGAAGAGGAAGATTTTGAATCAACTGAAACAAAGCTCTTGGTTGATATGGTTGTAATGGTATTGTATCCTGGAAAAGAGAGGACTGAGAAAGAATGGGCTAAGATAATTTTCTCTGCTGGCTTCAGTGACTACAAGATAACTCCAGTGGTGGGTTTGAGGTCTTTCATCGAGATTTATCCTTAA 1059 0.424 MECKSEERVSKLLRAQTHVWNHIFSFVNSMSLKCAIDLEIPDIIHKYGETMPFSQLTASLSLNPSKANCIYRLMRILTHSGFFSQLQVNENDLEMGYVLTDASTLLLKDNPLSMLPFFHAMLDPILTKPWHQLPTWFRNDDPTPFHTAHEMKIWDYAGRDPKLNQLFNDAMASDAQLVSNVVIERCSGVFKGLESLVDVGGGTGIMAKAIAKSFPHIDCTVFDLPHVVANLKGCENLKYVGGDMFESVPPADAVLLKWILHDWNDEQCVKILKKCKEGIKRKVIVIDMVVESEEEDFESTETKLLVDMVVMVLYPGKERTEKEWAKIIFSAGFSDYKITPVVGLRSFIEIYP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1216 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 349 IPR029063 -
Pvu11g1216 352 Gene3D - 2 106 IPR036388 -
Pvu11g1216 352 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Pvu11g1216 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 352 IPR016461 GO:0008168
Pvu11g1216 352 Gene3D Vaccinia Virus protein VP39 107 352 IPR029063 -
Pvu11g1216 352 Pfam O-methyltransferase domain 130 334 IPR001077 GO:0008171
Pvu11g1216 352 PANTHER O-METHYLTRANSFERASE 9 352 IPR016461 GO:0008168
Pvu11g1216 352 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Pvu11g1216 352 CDD AdoMet_MTases 196 291 - -
Pvu11g1216 352 PANTHER O-METHYLTRANSFERASE 9 352 - -
Pvu11g1216 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1216 Pvu-Chr11 18953485 18954923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1216 30 338 Monolignol Biosynthesis Gene Families AT5G54160 34.177 1.38e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1216 - K16040 gmx:100794122 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1216 11 18953485 18954923 Pvu11g1216 11 18953485 18954923 ECH