Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1215 ATGGAGGAAATGAGTGAACAAGGACTGTTCAATTTTCGTTCTGAAAGTACTCATCTGAGAGGCACAAACATCTCTCAGCCTAACTCTTTTATTCAAAGAAACTATTTAGGGGATCAGCACTTGTTATCACACAGATTTCCCCATATGCAGTACCATCTCTTTTATTATCAAACACAGCCTGCGCAAGAGGTCAGAGGTCACTCCATCAATTTTCATCCTCCAGTAACTGCTCCATCATATAGAGTTCCGGCAAATTCTCCAAGCAGTTCTTCAACGTCCATACAAAATGCACCATTTGGCTTTTATATGCAACAACCTCCACATCATAGAGGCAATATGCATGGGACAGCTCCTGGACACTGGAGGAATCTTCCTCCTGTGGCTTTTCTTCAAGATGATTATGTTCCTTCATTGGGTGATCATCATAGTGACTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGTGTTAGATGAACAGATTGGCAAGATTGGCAACGTAGGCATGGGTTTGTTACAAGAAATTATTACAAGAGAAATGAAGACAAAAACTTGTTTACTACCTAATAACTTGGAGGGGGCAACTTCTGAGGAACAGGAAACTGAGCTCTGCATAATTTGCCAGGATGAATATAAAAACAAAGAGGAGCTTGGAATTCTGCAATGCGGACATACATACCACGCAGACTGTATAAGGAGATGGTTACACGAGAAAAATGTGTGTCCCATGTGCAAATCAAAAGTATTAGATCTTGCATAG 762 0.4081 MEEMSEQGLFNFRSESTHLRGTNISQPNSFIQRNYLGDQHLLSHRFPHMQYHLFYYQTQPAQEVRGHSINFHPPVTAPSYRVPANSPSSSSTSIQNAPFGFYMQQPPHHRGNMHGTAPGHWRNLPPVAFLQDDYVPSLGDHHSDLDIEDMSYEELLVLDEQIGKIGNVGMGLLQEIITREMKTKTCLLPNNLEGATSEEQETELCIICQDEYKNKEELGILQCGHTYHADCIRRWLHEKNVCPMCKSKVLDLA* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1215 253 ProSiteProfiles Zinc finger RING-type profile. 205 246 IPR001841 -
Pvu11g1215 253 PANTHER OS04G0185500 PROTEIN 57 248 - -
Pvu11g1215 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 252 IPR013083 -
Pvu11g1215 253 SUPERFAMILY RING/U-box 204 250 - -
Pvu11g1215 253 Pfam Ring finger domain 205 246 IPR001841 -
Pvu11g1215 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 57 248 IPR045191 GO:0061630
Pvu11g1215 253 SMART ring_2 205 245 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1215 Pvu-Chr11 18825122 18829892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1215 145 250 C3H Transcription Factor Family AT2G15530 45.370 1.58e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1215 K19041 - gmx:100779069 232.646