Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu11g1210 | ATGCAGCTCCACCGTGCCTCCTCTGCGGCGAAAAACCTCGCCTGCTTCAGCTTCGCCTTGAAACTCGTGCTGTTGTACGCCGCCGAGGGACAGCCTCAGCACCGCGGTCCCGACCTACATTGGTACTCCGGAATGGCCACCTGGTACGGCGACCCCGAAGGAGACGGCAGCACGGGTGGGGCATGTGGGTATGGTTCGATGGTGGATGTGAAGCCGTTCAGGGCGAGAGTGGGAGCAGTGGGGCCCTTGCTGTTCATGAACGGTGAAGGGTGTGGTGCCTGCTACAAGGTAAGGTGTTTGGACAAGAGCATATGTACGAGACGAGCCGTCACAGTCATAATTACCGACGAGTGCCCCGGTTGCCCCTCTGACCAAACACACTTCGATCTCAGTGGTGCTGCCTTTGGCCGCATGGCCATTGCTGGGGAGAACGGTCCTCTCAGAGACCGTGGTCAAATCCCTGTCATTTACCGAAGAACACCGTGTAAATACCCCGGGAGAAAAATTGCTTTTCATGTTAATGAAGGCTCCACGCCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGACGCAGAGGGAGATATTGGCTCCATGCATATACGAGAAGCAGGGTCTACGGAATGGCTGCAGATGAATCACCTCTGGGGTGCAAATTGGTGCATTATTGGGGGGCCTTTAAGGGGACCATTCTCAGTGAAACTGAGTTCTTCCACTGGTAGAAGTCTCTCTGCTAGAGATGTTATTCCAGGCAGTTGGGTTCCAAAGGCAACTTACACCTCTCGTCTAAATTTCTACCCCTAG | 801 | 0.5418 | MQLHRASSAAKNLACFSFALKLVLLYAAEGQPQHRGPDLHWYSGMATWYGDPEGDGSTGGACGYGSMVDVKPFRARVGAVGPLLFMNGEGCGACYKVRCLDKSICTRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIREAGSTEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSTGRSLSARDVIPGSWVPKATYTSRLNFYP* | 267 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu11g1210 | 266 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 59 | 167 | IPR007112 | - | |
Pvu11g1210 | 266 | Gene3D | - | 163 | 261 | IPR036749 | - | |
Pvu11g1210 | 266 | PRINTS | Major pollen allergen Lol pI signature | 117 | 132 | IPR005795 | GO:0005576|GO:0019953 | |
Pvu11g1210 | 266 | PRINTS | Major pollen allergen Lol pI signature | 139 | 154 | IPR005795 | GO:0005576|GO:0019953 | |
Pvu11g1210 | 266 | PRINTS | Major pollen allergen Lol pI signature | 171 | 186 | IPR005795 | GO:0005576|GO:0019953 | |
Pvu11g1210 | 266 | PRINTS | Major pollen allergen Lol pI signature | 187 | 202 | IPR005795 | GO:0005576|GO:0019953 | |
Pvu11g1210 | 266 | PRINTS | Major pollen allergen Lol pI signature | 236 | 253 | IPR005795 | GO:0005576|GO:0019953 | |
Pvu11g1210 | 266 | SMART | dpbb_1 | 77 | 157 | IPR007112 | - | |
Pvu11g1210 | 266 | SUPERFAMILY | PHL pollen allergen | 167 | 260 | IPR036749 | - | |
Pvu11g1210 | 266 | Pfam | Lytic transglycolase | 82 | 156 | IPR009009 | - | |
Pvu11g1210 | 266 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 180 | 260 | IPR007117 | - | |
Pvu11g1210 | 266 | Pfam | Expansin C-terminal domain | 169 | 249 | IPR007117 | - | |
Pvu11g1210 | 266 | Gene3D | - | 28 | 162 | IPR036908 | - | |
Pvu11g1210 | 266 | SUPERFAMILY | Barwin-like endoglucanases | 40 | 166 | IPR036908 | - | |
Pvu11g1210 | 266 | PRINTS | Expansin/Lol pI family signature | 40 | 55 | IPR007118 | GO:0005576 | |
Pvu11g1210 | 266 | PRINTS | Expansin/Lol pI family signature | 58 | 76 | IPR007118 | GO:0005576 | |
Pvu11g1210 | 266 | PRINTS | Expansin/Lol pI family signature | 81 | 99 | IPR007118 | GO:0005576 | |
Pvu11g1210 | 266 | PRINTS | Expansin/Lol pI family signature | 150 | 166 | IPR007118 | GO:0005576 | |
Pvu11g1210 | 266 | PRINTS | Expansin/Lol pI family signature | 208 | 222 | IPR007118 | GO:0005576 | |
Pvu11g1210 | 266 | PRINTS | Expansin/Lol pI family signature | 246 | 260 | IPR007118 | GO:0005576 | |
Pvu11g1210 | 266 | PANTHER | EXPANSIN-LIKE PROTEIN B1 | 10 | 266 | - | - | |
Pvu11g1210 | 266 | PANTHER | EXPANSIN-B3 | 10 | 266 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu11g1210 | Pvu-Chr11 | 18631479 | 18634941 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu11g1210 | 13 | 202 | Expansin Gene Family | AT4G28250 | 70.000 | 1.44e-95 | 278 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu11g1210 | K20628 | - | gmx:100810778 | 527.324 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu5g1085 | 5 | 31132379 | 31135657 | Pvu11g1210 | 11 | 18631479 | 18634941 | PCT |