LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g1203	ATGGCTCAATTGCCACCAAAAATTCCAAACATGACACCCAATTGGTCAGACTTTTCTTCTCCTCACCAAAAGATGCCTTCCCTCAAAACCATGGCACCAAACATGTCAAACCAAAACCCTTCATGGGTGGATGAGTTTCTAGACTTCTCAACAGCTAGACGCGGTGCTCACCGGCGCTCGGTGAGTGACTCCATCGCCTTCCTTGAGGCACCAATGCTGGATCATCACTGTAAAAGTCGTGGCAGTGAAGGTGGTGACAACGAGAACGAGTTCGAGAGGTTTGATGATGAACAATTCATGTCCATGTTTAGTGATGAGGCCTCAGGGAATAATAACAACAACAATAATAATAACACCATGATGGCACTTTCCTCCTCCAACCCTTCTACACCCTCTGATCACAACAGCATCAACGATGAGAAGGAGATTTATACGGAAAAGGAGGAGGAGCAAGAGCAGAAGCAAGTGAAGAATGAGTCAGACGAGGATGAAAGCCAATGCAAGCAAGAAATCACACAAACCCCCGATGATAGTAATAATAGTAACGCAAATGCAACAACTTTTTCCAGTGAGAAAATCACAGACCCCAAGAGGGTCAAAAGAATCTTGGCAAATAGACAATCGGCACAAAGATCAAGAGTGAGGAAGCTGCAATACATATCTGAGCTTGAACGAAGTGTGACTTCATTACAGGCCGAAGTTTCTGTATTGTCTCAACGAGTTTCATTTTTGGATCATCAACGTTTGCTTCTAAATGTTGACAACAGTGGTTTGAAGCAAAGAATCGCTGCGCTGGCCCAAGACAAGATCTTCAAAGATGCACATCAAGAAGCACTGAAGAGGGAGATAGAGAAACTGAGGCAAGTGTATCACCAACAAAACAAAAAGAAGATGGACAATGCTGCAGGGTCACCATCCCAATCCCCATTTCCATCTCCAAAACCACGATGTGATACAGACACTGAGAATGAACAGCGTATCAATGTTTGA	990	0.4404	MAQLPPKIPNMTPNWSDFSSPHQKMPSLKTMAPNMSNQNPSWVDEFLDFSTARRGAHRRSVSDSIAFLEAPMLDHHCKSRGSEGGDNENEFERFDDEQFMSMFSDEASGNNNNNNNNNTMMALSSSNPSTPSDHNSINDEKEIYTEKEEEQEQKQVKNESDEDESQCKQEITQTPDDSNNSNANATTFSSEKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSQRVSFLDHQRLLLNVDNSGLKQRIAALAQDKIFKDAHQEALKREIEKLRQVYHQQNKKKMDNAAGSPSQSPFPSPKPRCDTDTENEQRINV*	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g1203	329	MobiDBLite	consensus disorder prediction	135	170	-	-
	Pvu11g1203	329	Gene3D	-	196	248	-	-
	Pvu11g1203	329	MobiDBLite	consensus disorder prediction	290	329	-	-
	Pvu11g1203	329	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	195	247	IPR004827	GO:0003700\|GO:0006355
	Pvu11g1203	329	SMART	brlzneu	193	257	IPR004827	GO:0003700\|GO:0006355
	Pvu11g1203	329	PANTHER	BZIP FAMILY TRANSCRIPTION FACTOR	1	326	-	-
	Pvu11g1203	329	Coils	Coil	134	166	-	-
	Pvu11g1203	329	MobiDBLite	consensus disorder prediction	171	192	-	-
	Pvu11g1203	329	Pfam	Basic region leucine zipper	194	242	IPR004827	GO:0003700\|GO:0006355
	Pvu11g1203	329	MobiDBLite	consensus disorder prediction	9	26	-	-
	Pvu11g1203	329	CDD	bZIP_plant_RF2	198	248	IPR044759	GO:0003700\|GO:0006355
	Pvu11g1203	329	Coils	Coil	276	296	-	-
	Pvu11g1203	329	Coils	Coil	220	240	-	-
	Pvu11g1203	329	MobiDBLite	consensus disorder prediction	1	26	-	-
	Pvu11g1203	329	MobiDBLite	consensus disorder prediction	104	134	-	-
	Pvu11g1203	329	MobiDBLite	consensus disorder prediction	104	193	-	-
	Pvu11g1203	329	PANTHER	BASIC LEUCINE ZIPPER 34	1	326	-	-
	Pvu11g1203	329	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	200	215	IPR004827	GO:0003700\|GO:0006355
	Pvu11g1203	329	SUPERFAMILY	Leucine zipper domain	197	251	IPR046347	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g1203	Pvu-Chr11	18326978	18330255	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g1203	1	274	bZIP Transcription Factor Family	AT3G58120	58.725	5.70e-98	289

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Pvu11g1203		bZIP_2	1.7e-10	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g1203	-		-	gmx:778128	474.167