Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1200 ATGCAGAGAAATAATAGTGGAATGCATCCAGCCTGTGCAGCATGCAAGCATCAAAGGAAGAAATGCAGTGAGAATTGTATATTGGCACCTTACTTTCCATCAAACAGAAGCCGTGAGTTCCATGCTGTGCACAAGGTTTTTGGTGTTAGCAACATAACCAAGTTGGTAAAGAATGCTAGAGAGGACGATAGAAGAAGAGTTGTGGATTCATTGACATGGGAAGCATGCTGCAGGCAAAGGGACCCTGTACATGGCCCTTATGGAGAGTACACAAAAGTTTACAATGAGTACAAGAAAGTGTTGGATGAACTTAAGAGATTCAGAAGCCAACATCAAATGTTGCAGTTTCCCTCTCTAGGGTTAAAGTCTGTGCAAGATTTGATTGCTTGCAAAGGGGAAGACAATGCAGAAGTGGATAATACATTGGATTATCTTCATGGAAAAAAGAATGGTATTATTGATTCTGAGACTTATAATACTTATTGTTCCAATTATTTTCAAGAGTTTCAGAATCTGAGGCCTCCTGAAGTTGTCATACCCTTTCAACAGCACTCTCAATCATACTACATTACAGGTATTCATCTTTGA 588 0.3946 MQRNNSGMHPACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAREDDRRRVVDSLTWEACCRQRDPVHGPYGEYTKVYNEYKKVLDELKRFRSQHQMLQFPSLGLKSVQDLIACKGEDNAEVDNTLDYLHGKKNGIIDSETYNTYCSNYFQEFQNLRPPEVVIPFQQHSQSYYITGIHL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1200 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 3 142 - -
Pvu11g1200 195 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
Pvu11g1200 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 142 - -
Pvu11g1200 195 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1200 Pvu-Chr11 18195659 18196246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1200 9 109 AS2 family AT1G06280 57.426 1.76e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu11g1200 LOB 4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1200 - - gmx:100809173 334.339