Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1187 ATGGCTTCAACTTCAGCATCTTATTCCTTTACCATTAGTGTGTTATTCTTCATTTTTGTGCACTTGTCATGTTTCGCAAACAACCTTAATGCAAAGCATAGTCACAACCATCGCAAGCCTCAACACACTCAGAATTATCCCTTGAACCCAAGACTTAACATGGCCTTTCTTGGCCTCCAAGCATGGAAGCAAGCGATCTACTCGGACCCAAATAACTTCACTGCCAATTGGGTAGGTCCTTCAGTGTGCAACTACACAGGTGTGTACTGTGCTCCCTCAGTTGATGACCCTAAAGTGAGAGTTGTGGCTGGCATTGACCTTAACTTTGGAGACATAGCAGGGTTTCTACCCAATGAAATAGGCCTTCTGTCAGACCTTGCACTCCTTCACCTTAGTAACAACCGCTTCTGTGGCATCTTGCCAATGTCCTTAACCAACCTCACTCTACTCTATGAGCTTGATATTAGCAACAACAGGTTTGTTGGTCCGTTTCCTTTGGTCGTGCTTTCCATTCCTATGCTCACCTACCTTGACCTCCGCTACAATGAATTTGAAGGGCCATTGCCTCCTCAACTATTCAACAAAACCTTTGATGCCATTTTCCTCAACAACAACCGCTTCAGCAGTAATATTCCTCCAAACTTGGGCAAAAACTTAGCTTCTGTCATGGTCTTTGCCAACAATAAATTTGGAGGGTGTCTCCCAGAAAGCATAGTGAACTTTGCTGACACTTTGGAGGAGCTTGTGCTAATCAACACTAGTTTGTCAGGTTGTTTGCCACAGCAAGTGGGGTTTCTCTACAAACTGAGAGTGTTGGATGTGAGTTTCAACAGCATTGTTGGCCCCATTCCTTATAGCCTTGCAGGGTTGTCTCACTTGGAGCAACTAAACTTGGGACACAACTTGATGAGCGGCACTGTCCCTATGGGGGTTTGTGAATTGCCAAACTTGGCAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGTATCTGTCAAAACTTGACATCAAAGAGAATAGTGTTTGATGACAGAAGGAACTGTTTGCCAGAGAAGCCACTGCAGAGGAGCCAAAAGGAATGCAGTGCCAAACTTGAACACCCAGTTGATTGCTCTGAGCTTTGCTGTGTTGTTGGGAGCAATGTCTCTGCTGGTTCAGTGGCTGTCCCACCTGCTGCTATTCCCGTAGCAATGCCTGTATCTGCTCCTCTTCTTGCACCAAGCCACCCTTAA 1239 0.4544 MASTSASYSFTISVLFFIFVHLSCFANNLNAKHSHNHRKPQHTQNYPLNPRLNMAFLGLQAWKQAIYSDPNNFTANWVGPSVCNYTGVYCAPSVDDPKVRVVAGIDLNFGDIAGFLPNEIGLLSDLALLHLSNNRFCGILPMSLTNLTLLYELDISNNRFVGPFPLVVLSIPMLTYLDLRYNEFEGPLPPQLFNKTFDAIFLNNNRFSSNIPPNLGKNLASVMVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQVGFLYKLRVLDVSFNSIVGPIPYSLAGLSHLEQLNLGHNLMSGTVPMGVCELPNLANFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSQKECSAKLEHPVDCSELCCVVGSNVSAGSVAVPPAAIPVAMPVSAPLLAPSHP* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1187 412 Gene3D Ribonuclease Inhibitor 57 225 IPR032675 -
Pvu11g1187 412 Gene3D Ribonuclease Inhibitor 226 376 IPR032675 -
Pvu11g1187 412 PANTHER EXTENSIN-LIKE PROTEIN 1 411 - -
Pvu11g1187 412 Pfam Leucine rich repeat 244 302 IPR001611 GO:0005515
Pvu11g1187 412 Pfam Leucine rich repeat N-terminal domain 57 90 IPR013210 -
Pvu11g1187 412 SUPERFAMILY L domain-like 64 342 - -
Pvu11g1187 412 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1187 Pvu-Chr11 16873412 16874991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1187 49 378 Leucine-rich Repeat extension Gene Families AT3G24480 55.589 1.26e-134 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1187 - - gmx:100782629 726.857