Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1176 ATGGCCTTAGATAACTTGGAGGAGACTGTGCCCCAAAACGAAAAGTGGAAATCATCCAATGAAGTCATTGCAGATTCTGATATAAACGCCTCTAGTGGCTTTGACTGCAACATCTGCCTTGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACAAATGGCTTCATTATTTTCAACGTACCTCTATAGACAGTGAAGAGCAACAGAATCCACAATGTCCAGTATGCAAAGCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATATGGTCGTGGCCTAACAACCAGACCTTCTAAGGGGAAGGCACATCAAGTTGGGACTGTCATACCACAGAGACCTTATGGTCCGAGATCATTGAATACTAGCAGTGTTTCCCAACCTATTTCTCAAAGTTATCATCATCCCTATAGTAATCCTTATTATACTCAGCAATTTAACTCAGTTCCAAGCGGTTATACCTCACCAATGCTTAGAACAAGTGGTTCACTAGACAACTCATTTGGAATCTTTGGGGAAATGATATATGCAAGGGTGTTTGGTAACCAGGTGACAAACATGCATCCATATGCTAATTCGTACAATCTTTCAGGGATCAGTAACCCAAGGATGAGAAGACATTTAATGCACGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTATGCTGCCTAGTTTTGTGTCTCCTCTTATTCTGA 726 0.4146 MALDNLEETVPQNEKWKSSNEVIADSDINASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHYFQRTSIDSEEQQNPQCPVCKAEVSQSSLVPLYGRGLTTRPSKGKAHQVGTVIPQRPYGPRSLNTSSVSQPISQSYHHPYSNPYYTQQFNSVPSGYTSPMLRTSGSLDNSFGIFGEMIYARVFGNQVTNMHPYANSYNLSGISNPRMRRHLMHVDKSLSRISCFLLCCLVLCLLLF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1176 241 ProSiteProfiles Zinc finger RING-type profile. 36 86 IPR001841 -
Pvu11g1176 241 CDD RING-HC_AtRMA_like 34 87 - -
Pvu11g1176 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 10 241 - -
Pvu11g1176 241 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Pvu11g1176 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 241 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu11g1176 241 SMART ring_2 36 85 IPR001841 -
Pvu11g1176 241 MobiDBLite consensus disorder prediction 103 136 - -
Pvu11g1176 241 Pfam RING-type zinc-finger 36 83 IPR027370 -
Pvu11g1176 241 SUPERFAMILY RING/U-box 23 92 - -
Pvu11g1176 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 114 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1176 Pvu-Chr11 15642200 15645563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1176 21 241 C3H Transcription Factor Family AT4G28270 38.428 3.06e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1176 K10666 - gmx:100786373 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1176 11 15642200 15645563 Pvu11g1176 11 15642200 15645563 ECH
Pvu11g1176 11 15642200 15645563 Pvu5g1081 5 31078090 31080739 PCT