Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1132 ATGGAGTTTGACCTTGAAAACCCTTTGGAAAATCTTCACTCCGATGCTGTCTCTTACCTCTTCCTCATTGAATCTGACCACACCCCATCACAGAATCATTCTCACACTCACAAACCCAAAGATCTTGACATCTCTATCAGAGGAGAACTTGTTTCCTTAATCTCACAGCTGTCCTGCATTTTGGATCCGGCTTTGTCTTATCTTGCTACCAACTATCTGGATCGGTTCCTAGCCAGCCAAGGGATTTCGCAACCGAAGCCATGGATCCTCAGGCTCATTGCTGTCTCTTGCATTTCTCTTGCTGTCAAGATGATGAGAACTGAATGCTCTGATGTTCAGGCTCTTTTGAATCAAAGTGATGGGGGCATAATGTTTGAGACACAAACGGTGCGAAGAATGGAAGCACTTATCTTGGGAGCATTACAATGGAGAATGCGGTCGATCACCCCATTCTCCTTCATACCTTTCTTCATTGCCTTGATGGGGCTCAAAGGCTCACCAATGGGGACGGTTCTGAAAAACCGTGCCTCTGAAATCATATTCATGTCACAAGGAGAGATAAGGCTTTGGGAGTTCAAGCCATCTATAATTGCTGCAACTGCCCTTTTGTGTGCTTCTCATGAGTTGTTTCCTTTTCAATATCCCTCCTTCTTAAAAGCAATAATCGATTCTTCATATGAAAGCGTGGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAGGAGTACGAGTCTGCGTTGAATGGGGTTTCAAGGTCAGACACGCCGATTAATGTGTTGGACCATCATTTTCTGAGTTCAGAAAGTGAAAAATCCAACGGAATCACCGTTGCTGATTCTCCTCTGAGACAAGAGAGGGACCTCAAAAGACGGAAAATCACTCCATGTGGAAACAATCCAACGATCCACAATTCTTGGATTAACTAA 933 0.4416 MEFDLENPLENLHSDAVSYLFLIESDHTPSQNHSHTHKPKDLDISIRGELVSLISQLSCILDPALSYLATNYLDRFLASQGISQPKPWILRLIAVSCISLAVKMMRTECSDVQALLNQSDGGIMFETQTVRRMEALILGALQWRMRSITPFSFIPFFIALMGLKGSPMGTVLKNRASEIIFMSQGEIRLWEFKPSIIAATALLCASHELFPFQYPSFLKAIIDSSYESVEQCYKVIQDIAIEEEYESALNGVSRSDTPINVLDHHFLSSESEKSNGITVADSPLRQERDLKRRKITPCGNNPTIHNSWIN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1132 310 PANTHER CYCLIN-D6-1-RELATED 5 298 - -
Pvu11g1132 310 Pfam Cyclin, N-terminal domain 21 145 IPR006671 -
Pvu11g1132 310 Gene3D - 30 146 - -
Pvu11g1132 310 Gene3D - 20 234 - -
Pvu11g1132 310 SMART Cyclin_C_2 148 258 IPR004367 -
Pvu11g1132 310 CDD CYCLIN 47 138 IPR013763 -
Pvu11g1132 310 PANTHER CYCLINS 5 298 IPR039361 -
Pvu11g1132 310 Pfam Cyclin, C-terminal domain 148 244 IPR004367 -
Pvu11g1132 310 SUPERFAMILY Cyclin-like 12 145 IPR036915 -
Pvu11g1132 310 SUPERFAMILY Cyclin-like 129 241 IPR036915 -
Pvu11g1132 310 SMART cyclin_7 48 139 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1132 Pvu-Chr11 14156572 14159312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1132 1 292 Core Cell Cycle Gene Families AT4G03270 42.949 2.76e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1132 K18812 - gmx:100820404 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1132 11 14156572 14159312 Pvu11g1132 11 14156572 14159312 ECH
Pvu5g1135 5 31982662 31984757 Pvu11g1132 11 14156572 14159312 PCT