Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1129 ATGGTGAGAACCCCATCTTGGGACAAAAGTGGACTGAGGAAGGGTACTTGGACTCCTGAGGAAGATAGAAAATTAATTGCCTATGTTACCAGATATGGATCCTGGAATTGGCGCCAACTTCCTCGGTTTGCAGGTCTGGCAAGATGTGGGAAAAGCTGTAGACTGAGATGGATGAATTATCTGAGGCCTAATGTCAAAAGAGGGAACTTCACTCCACAAGAAGAAGAATGCATCATCAGAATGCTCAAAAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACTCTTAAGAAAAGGTCTGAAATAAACATACTCCCAAATGAAGAAGCTAGAGCCTTCAAATCAAAGAATAAAGAATCCAAACAAGGGAGGGACTCGGTTCCTAACAATAATGGTGTTACTGTTACTCTTCCATCCAATTCCTGGACTTCTGATAATTCATCAGCCTCAGTCTCACCACTCTCATCTTCTAGCGGCATGTTTTCCTCCACATCTTCGGATGATTGCAGTGCTGCCAGCATGAAAAATATGGTGTTTGAAGATGACTTTCGTTTTCTGGATTCATACATAGAGTCTATGAATGCAAGTTTCTGGACAGAGCTAAATCTGGGAGACGTCACCTACAGTGCAGCAGGTGAAATAGTGTCAGGAGATACTAGTTGCGCAATCAAAAGTACAGATGCTAGCGTCCGTGATTCTCGTGCAATGTCTCTGCATGAGTCAACCAGCGAAAGTATTGTTGTTGATAATGACTCTGGCAGCTTTCCCGATGCATATGCAGAGGCTACGGTTGAGAACTTTTGGATGCAGCCATATGTGGCGGATATTTCCCACGTTCCAAGCGAACTTCTTGTCCCTTCCGTGGTAGAATCTGAATATTTTACTCCAATCTATGATGATCTGTGGGGACAAAGTCATTTCTATTAG 975 0.4308 MVRTPSWDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNVKRGNFTPQEEECIIRMLKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSEINILPNEEARAFKSKNKESKQGRDSVPNNNGVTVTLPSNSWTSDNSSASVSPLSSSSGMFSSTSSDDCSAASMKNMVFEDDFRFLDSYIESMNASFWTELNLGDVTYSAAGEIVSGDTSCAIKSTDASVRDSRAMSLHESTSESIVVDNDSGSFPDAYAEATVENFWMQPYVADISHVPSELLVPSVVESEYFTPIYDDLWGQSHFY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1129 324 Gene3D - 7 67 - -
Pvu11g1129 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu11g1129 324 CDD SANT 69 112 IPR001005 -
Pvu11g1129 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu11g1129 324 CDD SANT 16 61 IPR001005 -
Pvu11g1129 324 MobiDBLite consensus disorder prediction 140 176 - -
Pvu11g1129 324 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 259 - -
Pvu11g1129 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu11g1129 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu11g1129 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
Pvu11g1129 324 MobiDBLite consensus disorder prediction 130 176 - -
Pvu11g1129 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu11g1129 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu11g1129 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu11g1129 324 Gene3D - 69 115 - -
Pvu11g1129 324 SMART sant 13 63 IPR001005 -
Pvu11g1129 324 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1129 Pvu-Chr11 13946276 13947768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1129 1 143 MYB Transcription Factor Family AT2G31180 58.741 5.64e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g1129 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1129 K09422 - gmx:778184 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1137 5 32159234 32162426 Pvu11g1129 11 13946276 13947768 PCT
Pvu11g1129 11 13946276 13947768 Pvu5g1136 5 32024860 32026313 PCT