Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1128 ATGGTGAGAACCCCGTCTTGTGACAAAAGTGGACTGAGAAAGGGTACTTGGACTCCGGAGGAAGATATGAAGTTAGTTGCTTATGTCACTAGATATGGATGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAACTATCTAAGGCCTAACCTCAAAAGAGGGAACTTCACTCCACAAGAAGAAGAATGCATCATCAGGATGCTCAAAAAACATGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCACTGGCACACCACTCTCAAGAAAAGGTCTCAACAAAATACAGTCACAGATGAAGAAGCCAGAGCCTCCAAATCAAAGAATAAAGAATCCAGGGCAGTGAGGGACTCGGTTCCCAACAAAAATGGTGTTACTGTTAGTCTTCCAGCTACTTCCCAGATTTCAGATAATTCATCAGGCTCATTCTCCCCAGTTTCATCCTCCAGCAGCGAGTTTTCCTCCATGACTTCAGATCATTCCAATTCTGCTAGTATGGAAAATTTGGTGTTGGAAGATGACTTCGGTTTTCTTGACTCATATGTGAATGAAAGTTTCTGGAAAGAACTCAATCTGGATGGAGTTTCCTACGGTGCACCTTGTGAAGTACTGTCAAGAGATACTAATGACAGTTTTCAAAGTACAAATTCTACACAGAACGTTGATTCTTGTGCATCGTCTCCGCATCAATCATCCAGTGAAAGTATGGTTATGGAGAATGACTTTGGCACCTTTCTCGATGCATATGAAGAGGTAACAGTTGATAACTTTTGGTCACAGCCATTTGTGGTTGACGTGTCCCACGTTCCAAGCGAGCTACTTGTTCCCTCCGTGGAAGAATCGGAATATTTTGCTCCACTGTATGATGATTTGTGGGGTCAAAGTCATTTTGTACAATAA 972 0.4259 MVRTPSCDKSGLRKGTWTPEEDMKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTPQEEECIIRMLKKHGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSQQNTVTDEEARASKSKNKESRAVRDSVPNKNGVTVSLPATSQISDNSSGSFSPVSSSSSEFSSMTSDHSNSASMENLVLEDDFGFLDSYVNESFWKELNLDGVSYGAPCEVLSRDTNDSFQSTNSTQNVDSCASSPHQSSSESMVMENDFGTFLDAYEEVTVDNFWSQPFVVDVSHVPSELLVPSVEESEYFAPLYDDLWGQSHFVQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1128 323 SMART sant 66 114 IPR001005 -
Pvu11g1128 323 SMART sant 13 63 IPR001005 -
Pvu11g1128 323 CDD SANT 69 112 IPR001005 -
Pvu11g1128 323 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 261 - -
Pvu11g1128 323 CDD SANT 16 61 IPR001005 -
Pvu11g1128 323 MobiDBLite consensus disorder prediction 112 185 - -
Pvu11g1128 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu11g1128 323 MobiDBLite consensus disorder prediction 118 141 - -
Pvu11g1128 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 261 - -
Pvu11g1128 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu11g1128 323 MobiDBLite consensus disorder prediction 234 257 - -
Pvu11g1128 323 Gene3D - 14 66 - -
Pvu11g1128 323 Gene3D - 68 143 - -
Pvu11g1128 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu11g1128 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu11g1128 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu11g1128 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu11g1128 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu11g1128 323 MobiDBLite consensus disorder prediction 143 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1128 Pvu-Chr11 13902942 13904399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1128 1 214 MYB Transcription Factor Family AT2G31180 45.370 2.00e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g1128 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1128 K09422 - gmx:100777107 455.292