Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1127 ATGATGGTGAGAACCCCGAGTAGTGACAAAAATGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACCAGAAGTTGGTTGATTATATTACTAGGTATGGCCACTGGAATTGGCGCCTGCTCCCCAAATTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTGAATTACCTAAGACCAAACCTGAAAAGAGGAAACTACAGTGAAGAAGAGGAGGAAACTATCATCAAGCTTCACCGACATCTAGGAAACAGATGGTCTGCTATTGCTGCACGGATTCCAGGAAGAACAGACAATGAAATAAAAAACTATTGGCACACCAACCTCAAGAAACGGTCTGAACAAGACTCAGCCACAGACTCTCAAGTCTCAAACTCATGTGAACAATCCCTAACAACAACAACTGAACCAAGCGGAAATACTTTCCAAAGCTTTAACTCCACGCAAGATTATTCCCCATTTTCCCAGAATTCATCATCCTCAATAACAAGCACAGAGTGTAACACTGTCACCATCAACGAAAATCTGGCTCCGCAAGATGAATTTGCCTTTTGGGACGCTGACACTGATCTTATGACCGGAAATTTCTGGTTAGAATCATATATGCGTGATATTTCGTACGTACCTAATGAGCCTGAGTACAGTTTTGACGCAGAACTTTGGAGCCATGATAACTGA 690 0.4319 MMVRTPSSDKNGLKKGTWTPEEDQKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYSEEEEETIIKLHRHLGNRWSAIAARIPGRTDNEIKNYWHTNLKKRSEQDSATDSQVSNSCEQSLTTTTEPSGNTFQSFNSTQDYSPFSQNSSSSITSTECNTVTINENLAPQDEFAFWDADTDLMTGNFWLESYMRDISYVPNEPEYSFDAELWSHDN* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1127 229 MobiDBLite consensus disorder prediction 122 166 - -
Pvu11g1127 229 Gene3D - 14 67 - -
Pvu11g1127 229 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 211 - -
Pvu11g1127 229 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pvu11g1127 229 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pvu11g1127 229 SMART sant 67 115 IPR001005 -
Pvu11g1127 229 SMART sant 14 64 IPR001005 -
Pvu11g1127 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pvu11g1127 229 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pvu11g1127 229 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pvu11g1127 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pvu11g1127 229 CDD SANT 70 113 IPR001005 -
Pvu11g1127 229 MobiDBLite consensus disorder prediction 116 166 - -
Pvu11g1127 229 Gene3D - 69 140 - -
Pvu11g1127 229 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pvu11g1127 229 CDD SANT 17 62 IPR001005 -
Pvu11g1127 229 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 2 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1127 Pvu-Chr11 13856644 13861601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1127 2 156 MYB Transcription Factor Family AT2G31180 57.962 4.44e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g1127 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1127 K09422 - gmx:100778518 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1138 5 32274219 32278392 Pvu11g1127 11 13856644 13861601 PCT
Pvu11g1127 11 13856644 13861601 Pvu5g1137 5 32159234 32162426 PCT