Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1126 ATGGTGAGAACCCCTTACTGTGACAAAAGTGGACTGAAAAAGGGAACATGGACACCAGAAGAAGATTGGAAATTGATTGCTTATGTCACTACACATGGCCATAAGAACTGGCGCCAGTTGCCTAAGTTTGCAGGTAATAGAAGTGCGCCAGTTTCTAGGTGTGGAAAGAGCTGCAGATTGAGGTGGATGAATTACTTAAGGCCAGGCATCAAAAGAGGGAACTACACCTATGAGGAAGAAGAGAGGATTGTCAAACTGCACAAAATTCTTGGAAATAGGTGGTCTGTGATTGCTTCCCACTTACCTGGAAGATCAGATAACGAGATAAAAAATCACTGGCATGCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAGAGGTTGAAGCTTCCAATCCAAAACACCACTCCCTAGTTGAATCCATTCAAGAGGAATCTCGGGAAGTTGTTGCAAGCAGTTTCCAGAACAGTTCCCTAGCTACTTCCCAAACTCCTGACGGTGATTTTCCATCGCCCCAGCTTACATCATTGAGCAATGTTCTATGCATGATATCCGAACCTGAACCTGAACCTGAACCAGCCAGTAACTGGAATTTGGCTACTGATAACTTTGCTGATTTTATGGAGGAAAACACAGATCCTATAAGTGCACATTCTTGGAAAGAACTTTATGATATTTCGTTCATAAGTGAATTTCTCACTCCTTTTGTGACTGAACCTGAAAGTGTTTGTTCAGTTTATGATGTCTGGGGGCTGTTCAATTAG 774 0.4212 MVRTPYCDKSGLKKGTWTPEEDWKLIAYVTTHGHKNWRQLPKFAGNRSAPVSRCGKSCRLRWMNYLRPGIKRGNYTYEEEERIVKLHKILGNRWSVIASHLPGRSDNEIKNHWHAHLKKRFQHNSETNEEVEASNPKHHSLVESIQEESREVVASSFQNSSLATSQTPDGDFPSPQLTSLSNVLCMISEPEPEPEPASNWNLATDNFADFMEENTDPISAHSWKELYDISFISEFLTPFVTEPESVCSVYDVWGLFN* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1126 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pvu11g1126 257 CDD SANT 16 66 IPR001005 -
Pvu11g1126 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Pvu11g1126 257 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 168 - -
Pvu11g1126 257 ProSiteProfiles Myb-like domain profile. 9 66 IPR001005 -
Pvu11g1126 257 Pfam Myb-like DNA-binding domain 14 66 IPR001005 -
Pvu11g1126 257 Pfam Myb-like DNA-binding domain 72 116 IPR001005 -
Pvu11g1126 257 SUPERFAMILY Homeodomain-like 11 113 IPR009057 -
Pvu11g1126 257 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Pvu11g1126 257 SMART sant 71 119 IPR001005 -
Pvu11g1126 257 SMART sant 13 68 IPR001005 -
Pvu11g1126 257 CDD SANT 74 117 IPR001005 -
Pvu11g1126 257 Gene3D - 13 71 - -
Pvu11g1126 257 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 168 - -
Pvu11g1126 257 Gene3D - 74 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1126 Pvu-Chr11 13657402 13658994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1126 1 128 MYB Transcription Factor Family AT1G06180 63.281 1.04e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g1126 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1126 K09422 - gmx:106799185 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1126 11 13657402 13658994 Pvu5g1138 5 32274219 32278392 PCT