Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1120 ATGAAGAAGTGCGAACTGTGCAAGCTTCCGGCGAGGATTTTCTGCGAGTCGGACCAGGCCAGCTTATGCTGGGACTGCGACGCAAAGGTTCACGGCGCCAACTTCTTGGTCGCCAGACACTCGCGAACGCTCCTCTGCCGCACGTGCCACTCTTCCACGCCGTGGAAGGCCTCCGGCGCCAGACTCGCCAACGCCGCCTCCATCTGCAACCGATGCGCCGCCTCCACCGCGGAAGAACAGGACGAGACCGAATCCGGCAATGACGAGGAACCAGACACCGAGGACGACGATGTATCCGGCGAGGAGGACGGCGAGAATCAGGTCGTGCCGTGGTCCTCCACATCGCCGCCCCCGGCGAGCTCCTCCGGCAGCGAGTGGTCGTGTTTCAGCGGGTGCAAAAACGACGACGACGACGAAGGTGCTTCTCGTTCCGCATGTGAACCGGAAACGGCAACATCCTCGTTGAAGCGACCACGCGAGAACGACGACGACGTTTCCGGTCGTGATCCCCGGGGGATTGGAAGGGTTAGGCGTCTGAACGGAGGTGGCGTGTGA 555 0.627 MKKCELCKLPARIFCESDQASLCWDCDAKVHGANFLVARHSRTLLCRTCHSSTPWKASGARLANAASICNRCAASTAEEQDETESGNDEEPDTEDDDVSGEEDGENQVVPWSSTSPPPASSSGSEWSCFSGCKNDDDDEGASRSACEPETATSSLKRPRENDDDVSGRDPRGIGRVRRLNGGGV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1120 184 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Pvu11g1120 184 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 170 - -
Pvu11g1120 184 PANTHER - 1 170 - -
Pvu11g1120 184 MobiDBLite consensus disorder prediction 153 175 - -
Pvu11g1120 184 CDD Bbox1_BBX-like 3 45 - -
Pvu11g1120 184 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Pvu11g1120 184 MobiDBLite consensus disorder prediction 106 129 - -
Pvu11g1120 184 MobiDBLite consensus disorder prediction 81 103 - -
Pvu11g1120 184 SMART bboxneu5 1 45 IPR000315 GO:0008270
Pvu11g1120 184 MobiDBLite consensus disorder prediction 77 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1120 Pvu-Chr11 13259451 13260539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1120 2 118 C2C2-CO-like Transcription Factor Family AT5G54470 47.761 3.55e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu11g1120 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1120 - - vun:114168631 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1120 11 13259451 13260539 Pvu11g1120 11 13259451 13260539 ECH
Pvu5g1145 5 32442660 32444100 Pvu11g1120 11 13259451 13260539 PCT