Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1110 ATGTTAGTGAAAAACCACAACAAAGGGGATGGATCCAAGTCCCTGGCCGATACACTGGCGAGATGGAAAGAATATAATGCTTGGCTTGAATCTAGCAATGAGGCTGAGAAGGCAGTTAGGAAAGTTCCTGCCAAAGGATCAAAGAAGGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGTTGTAACTACAGAGGAGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTATGGTTGGGTACTTTTCCCACTGCCATTAGTGCTGCTCTGGCTTATGATGAAGCAGCTAGGGCTATGTATGGTTCTGGTGCACGCCTCAACTTCTCCAACGTTGAAGTTTCAACTTTATCTGAGGAATCATCAAGAAACTCTCCAGCTGCTAGTCAATCTGGTTCTGCGTTGATGATATCAGAGAGTTCTGAATGTAAGATATTTCCGAACAGCTCTGGGGGAGACACACCTAAGGATGATGACATGGAAGGCCTTTCCTTATCCTTAAGTGTTAAACATGAGGTAGTGGAGGGTGAATCCGGGACCAGTTTACCCCATCTTTCATTGTCTTGA 600 0.4633 MLVKNHNKGDGSKSLADTLARWKEYNAWLESSNEAEKAVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAISAALAYDEAARAMYGSGARLNFSNVEVSTLSEESSRNSPAASQSGSALMISESSECKIFPNSSGGDTPKDDDMEGLSLSLSVKHEVVEGESGTSLPHLSLS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1110 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 157 - -
Pvu11g1110 199 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Pvu11g1110 199 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Pvu11g1110 199 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Pvu11g1110 199 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Pvu11g1110 199 MobiDBLite consensus disorder prediction 155 199 - -
Pvu11g1110 199 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Pvu11g1110 199 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Pvu11g1110 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 157 - -
Pvu11g1110 199 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Pvu11g1110 199 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1110 Pvu-Chr11 12892620 12894683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1110 8 153 AP2-EREBP Transcription Factor Family AT2G40340 53.333 2.78e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu11g1110 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1110 - - gmx:100783729 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1151 5 32566424 32568115 Pvu11g1110 11 12892620 12894683 PCT