Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1092 ATGGTTGAGCGAAAGCAGTTCAAGACCAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGTAATCGCCATAATTGCTCCTTCGCGCATGGGAATTCCGAGCTTCGACGTTTCCCTGCCTCGTTTAGTGGGAGGAGAGACTATTTAGGTAATGACTTGAGGGATAAACTTGACAGAAGGAATTTATCTCCTCGAAGATACTCACCAGCTCAAGATGCAAGAGGCCGCCAGAGCATCCGTGAATACAGTCCTCCAAGGTCTCTGGAGAATAAAAGACATAGGAGAAAACAGGGTATTACTGGTCAAAGTGATACTTCTGGAAATTTGAAAGCCTCAGATAGAGTTCAAGATGAAGTAAAAGAAAGAAAAATGCTTTCCTCTGGTTCTAGGAATACTCTTGAGGAGCAGCTGAAGAAAGTAGATTCAGGTATCGGTGTTCTACAAAACCGAAAATTCCAGCTAGAGGTCTACCTTGATGAGAGTATTCAAGAAGTAGATAGCCTTAAGTCTAGAATTCAGGAGCTTGAAGCTCAATTATGCAAAGAGGATGAGGAGTGCAAAAGAATTACTTCAAGAATAAGGAAATTTGTTAGAGTCCACAATCATTCGTCACAGTTACAAGATGAACTGAAGAGATCTCAAGTCCGACTTCAACGGTTCGGAGATCAGCTTGTCTCAGAAATTTCTAAAATTGGTGCCAATGAAGATTTAAGCATTGATATTGTCAGTAATGGTGAAAATACTGGTCTTCTTCCAATTGTCAAGCATGTGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTACATATTGAACGAGATGCTTTGGAAGATTTAAAACAAGATAGATCAAAAGATGGCCATTTGGTTGAGACAGGTAGAACTAAGAAGCGATCTCGGTGGAATATATCAGATCAATTGAATGACGAGTCCCTTGGGGGCCCAGACAATGCAACTGAAGTTATTAGAGTTCTAGATCCTGAAGGCAGGCACAAGAGAGGATTGAAGCAACCTAGGATTGAAGTGCCATCAACTAGCATGGCAGCTCATGTGGCTGATGATGACGTTGATATTGAACTTTACAACGGAACTGACGTCAATGAAACTGCAAATACAGAAAATGAGAATGGTGTGCCATATAAGGTGAAGGCTGCACCACTTATGCTTCCCCCAGCTTTGATACCTCGCAGCAATTATTCGAAGTACGAGGGTAACGACGAGAATGTTGATGTGGATGGCTGA 1239 0.4197 MVERKQFKTKLCVLYQRGRCNRHNCSFAHGNSELRRFPASFSGRRDYLGNDLRDKLDRRNLSPRRYSPAQDARGRQSIREYSPPRSLENKRHRRKQGITGQSDTSGNLKASDRVQDEVKERKMLSSGSRNTLEEQLKKVDSGIGVLQNRKFQLEVYLDESIQEVDSLKSRIQELEAQLCKEDEECKRITSRIRKFVRVHNHSSQLQDELKRSQVRLQRFGDQLVSEISKIGANEDLSIDIVSNGENTGLLPIVKHVEHNDASSHRKRLHIERDALEDLKQDRSKDGHLVETGRTKKRSRWNISDQLNDESLGGPDNATEVIRVLDPEGRHKRGLKQPRIEVPSTSMAAHVADDDVDIELYNGTDVNETANTENENGVPYKVKAAPLMLPPALIPRSNYSKYEGNDENVDVDG* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1092 412 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Pvu11g1092 412 MobiDBLite consensus disorder prediction 110 127 - -
Pvu11g1092 412 MobiDBLite consensus disorder prediction 54 130 - -
Pvu11g1092 412 Gene3D - 1 36 - -
Pvu11g1092 412 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 411 IPR045868 GO:0046872
Pvu11g1092 412 Coils Coil 157 177 - -
Pvu11g1092 412 SUPERFAMILY CCCH zinc finger 4 36 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu11g1092 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1092 - - gmx:100811131 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1092 11 12387181 12398404 Pvu11g1092 11 12387181 12398404 ECH