Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1088 ATGTCTGAATTCGAAACAAACATCCCAAGTGCTTTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGACGAAAGAGTATGTTCATGTTCGTGTACAACAACGTAACGGAAGGAAAAGCCTAACAACTGTTCAAGGATTAAAGAAAGAGTATAGCTATAGCAAAATACTCAAGGACCTGAAGAAAGAATTTTGCTGCAATGGTACTGTTGTCCAAGACCCTGAGTTGGGCCAGGTTATACAACTTCAGGGAGATCAAAGAAAAAATGTTTCTACATTCCTTGTGCAGGCTGGCATAGTGAAGAAAGAACATATCAAGCTTCATGGTTTCTAA 342 0.4094 MSEFETNIPSAFDPFAEANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKLHGF* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1088 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Pvu11g1088 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Pvu11g1088 113 Gene3D - 1 113 - -
Pvu11g1088 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Pvu11g1088 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Pvu11g1088 113 SUPERFAMILY eIF1-like 8 113 IPR036877 GO:0003743|GO:0006413
Pvu11g1088 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Pvu11g1088 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Pvu11g1088 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 8 113 IPR005874 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1088 Pvu-Chr11 12287585 12290231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1088 1 113 Eukaryotic Initiation Factors Gene Family AT1G54290 88.496 8.92e-75 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1088 K03113 - gmx:100784390 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1088 11 12287585 12290231 Pvu11g1088 11 12287585 12290231 ECH