Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1087 ATGGCTGACATAGATCGCTCCTCTGATAATTCTTCTGCTGATTCTAAAGAAAAAACCCTCCAAATTTCAAATGTTGAATTTTCTGAGGCTGAGGAAATCCTTATTGCCATGGTGTATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACTGCAGAAGAGATAGAGAAGTATTGGACTTCAAGATATTCGACAAGCCAATGA 222 0.4009 MADIDRSSDNSSADSKEKTLQISNVEFSEAEEILIAMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRYSTSQ* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1087 73 CDD SANT 26 65 IPR001005 -
Pvu11g1087 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 72 - -
Pvu11g1087 73 SMART sant 23 71 IPR001005 -
Pvu11g1087 73 ProSiteProfiles Myb-like domain profile. 27 69 IPR001005 -
Pvu11g1087 73 SUPERFAMILY Homeodomain-like 23 69 IPR009057 -
Pvu11g1087 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 73 IPR017930 -
Pvu11g1087 73 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 72 - -
Pvu11g1087 73 Gene3D - 26 68 - -
Pvu11g1087 73 Pfam Myb-like DNA-binding domain 26 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1087 Pvu-Chr11 12282442 12283717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1087 27 70 MYB Transcription Factor Family AT5G14750 50.000 2.43e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu11g1087 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1087 - - var:108340066 137.117