Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1074 ATGGTTATGGGGAAAACATTGTTCCTCTTGGTTTTGTGCTTGTGGATTCCCTTGGAAGTGATGGGGAGGAAAGAACCTTCCTCAGCTACCAGTGTGAATTCCATTGTTTCTTCAAGGCCGAAGGTTGTGAAATTTGGAGCCCTCTTCCCTGTGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTTATTTTGCACAGTACAAATTGCAGTGCGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCGCTATCATCTGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCAACTGACCCCACTCTATCTTCTCTACAATACCCATATTTTATCCGCACTACTCAGAACGATTATTTTCAGATGTATGCAGTTTCAGCATTTATTAATTATCACAGATGGAGGGAGGTAATTGCCATCTATGTAGATGATGACAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTGGCAAGATCTCTTACAAGGCTGCTTTTTCTCCCGGGGCCTCAGAAAGTGATATCAGTGACTTGTTAAATGAAGTGAATATGATGGAATCCCGAGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATCTTCTCTATTGCCAAGAAGCTCAGAATGACGGGCAGTGGCTATGTTTGGATTTCAACAGATTGGCTTCCTTCAGTGCTGGATTCGTTAGAGTCACCTGATCCTGGCACAATGGATCTCTTACAAGGGATCGTGGCTTTTCGTCATTACATTCCTGATACTGATCCCAAGAATAATCTTCTCTCCAGGTTGAAAAGCCAAAGAGTCAACGAGACTGTAAGCTTCAATTCTTATGCATTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAACGAAGGTGGAAATATATCTTTTTCTAATGACCCTAAGTTTCAAGACACAAATGGAAGCATGTTGCATTTAGAGTCACTTCGTACCTTTGATGGTGGTCCACAGTTTCTCCAGACAGTTTTGGGAATGAACTTCACTGGTGTGAGTGGTCAAATTGTGTTTGACATGGACAAGAATTTACTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGATCCCGTAGAATTGGTTATTGGTCTAATCATTCTGGTTTATCAGTTATAGCTCCTGAAACTTTATATCTGAAAAAGCCGTCAAACACATCTTTGCATAGTGTGATATGGCCTGGAGAGGTTACAGCTACACCAAGGGGGTGGGTATTTCCGAACAATGGACAGGCACTTAGGATAGCAGTTCCTAACCGAGTAAGCTACAAGGACTTTGTTTCTAAGGACAAGAACCCACCAGGGGTACAAGGCTATTGCATTGACGTCTTTGAAGCAGCCATAAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTTGGAAATGGTAAAAGGAATCCTAGCTACAACGACCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATGTTACAATAGTCACAAATAGGACAAGGATTCTGGATTTTACTCAACCTTTCTTGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTGAGGAGCAGAAGTCAAGCCCTTGGTCTTTCCTTGAGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGCTTTTTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACCGGCTCAATCCTGACTTCCGGGGTTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCTCACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGCTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCAACAACTGTCATCTCAAATTGTAGGAATTGACAGCTTGATCTCAAGTACTGAACCGATTGGAATTCAAGATGGTTCATTTGCACGGAAGTATCTTGTAGATGACCTCCATATAGCTGAATCTAGAATAGTTACGTTGAAAAACATGGAGGATTATATTAATGCCCTTCAGCGAGGCCCTAAAGCTGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTACATTGAGGTCTTGATGTCCAGCAGTCACTGTAAGTTCAGAATTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACAGCCATTCTTCAACTTTCTGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAATACAAAGGAGTGTACAACCGTTGAAGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATTTTTCATTGCCCTGGTTATTTTCTTTGCTAGAATCTTCTGTCAATATAACAAATTCATCCCAGAGTCTGAAAAAACTGATAAGGAAATTCAACCAGTTAGGCGTTCTAGACGTCCAAGCAGAACTCCTAGCCTGAAGAAGTTGATGGTATTTGTAGATAAAAGGGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAAAAAAGGAGACACAGCCAAAGCTTGGATGATCATTCTGTTCCATCAGCCATCTAG 2790 0.4186 MVMGKTLFLLVLCLWIPLEVMGRKEPSSATSVNSIVSSRPKVVKFGALFPVDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRGKISYKAAFSPGASESDISDLLNEVNMMESRVYVLHVNPDTGLAIFSIAKKLRMTGSGYVWISTDWLPSVLDSLESPDPGTMDLLQGIVAFRHYIPDTDPKNNLLSRLKSQRVNETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSNDPKFQDTNGSMLHLESLRTFDGGPQFLQTVLGMNFTGVSGQIVFDMDKNLLHPAYEILNIGGSGSRRIGYWSNHSGLSVIAPETLYLKKPSNTSLHSVIWPGEVTATPRGWVFPNNGQALRIAVPNRVSYKDFVSKDKNPPGVQGYCIDVFEAAIKLLPYPVPRKYMLFGNGKRNPSYNDLVEQVAQNNFDAVVGDVTIVTNRTRILDFTQPFLPSGLVVVVPFEEQKSSPWSFLEPFTTEMWCVTGAFFLFVGSVVWILEHRLNPDFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIVGIDSLISSTEPIGIQDGSFARKYLVDDLHIAESRIVTLKNMEDYINALQRGPKAGGVVAVVDELPYIEVLMSSSHCKFRIVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNTKECTTVEVDSNKLALTSFWGLFLICGIAFFIALVIFFARIFCQYNKFIPESEKTDKEIQPVRRSRRPSRTPSLKKLMVFVDKREAEVKEILRENKKRRHSQSLDDHSVPSAI* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1074 929 Gene3D - 707 819 - -
Pvu11g1074 929 SUPERFAMILY Periplasmic binding protein-like I 38 466 IPR028082 -
Pvu11g1074 929 PANTHER GLUTAMATE RECEPTOR 3.4 34 910 - -
Pvu11g1074 929 MobiDBLite consensus disorder prediction 908 929 - -
Pvu11g1074 929 PIRSF IGluLR_plant 1 928 IPR017103 -
Pvu11g1074 929 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Pvu11g1074 929 Gene3D - 62 406 - -
Pvu11g1074 929 Gene3D - 585 706 - -
Pvu11g1074 929 Gene3D - 469 584 - -
Pvu11g1074 929 Gene3D - 158 431 - -
Pvu11g1074 929 CDD GluR_Plant 474 815 - -
Pvu11g1074 929 Pfam Ligand-gated ion channel 817 845 IPR001320 GO:0015276|GO:0016020
Pvu11g1074 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Pvu11g1074 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Pvu11g1074 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 247 270 - -
Pvu11g1074 929 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Pvu11g1074 929 SMART GluR_14 475 817 IPR001320 GO:0015276|GO:0016020
Pvu11g1074 929 Pfam Bacterial extracellular solute-binding proteins, family 3 484 816 IPR001638 -
Pvu11g1074 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 910 - -
Pvu11g1074 929 SUPERFAMILY Periplasmic binding protein-like II 449 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1074 Pvu-Chr11 11925343 11931309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1074 39 782 Ion Channels AT1G05200 67.914 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1074 K05387 - gmx:100802782 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1074 11 11925343 11931309 Pvu11g1074 11 11925343 11931309 ECH
Pvu5g1187 5 33238941 33244051 Pvu11g1074 11 11925343 11931309 PCT
Pvu11g1074 11 11925343 11931309 Pvu5g1188 5 33247418 33252583 PCT